Sol Genomics Network

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Unigene SGN-U269347

Unigene Basic Information

Unigene ID:	SGN-U269347
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269347
mRNA sequence:	Length: 1215 bp

>SGN-U269347 Solanum tuberosum #4 (30 members)
TAAAAACCTTATCTTCAAAATTTTCTTCAACCCCTTCTCCAATGGCTTCTTCTTCTTCTTCCCTCCATTTCCTTTCACTTACACCACAAA
CACTCCCAAAACCCACTTCCCAAACAACTTCAATTTCCTTCTTTTCACTTCCTCCTTCCTCTTTAAACCTTTCTTTATCATCTTCTTCAA
CCCCAAGAAACTTCGAATCTTCTCGTTTTGTTCGTAAAGTAACCCTTTCTGATTTTGACCAAATTGAGGAAGTTGAGGCTGGTGATGATG
ATGAGGAGGAGGGGGGTTTGAGTGATGAAGGTGCTTCATATGAAGAACGTAATGCCAATCCTGACCTTAAAATCTTTGTTGGTAATTTGC
CTTTCAGTGTTGACAGTGCGGCTCTTGCTGAGCTTTTTGAGCGTGCTGGAGATGTTGAAATGGTTGAGGTTATCTATGACAAGCTTACAG
GAAGAAGCAGAGGTTTTGGCTTTGTGACAATGTCCTCCAAAGAGGCAGTTGAAGCCGCCTGTCAACAATTTAATGGCTATGAAATTGACG
GGAGGGCACTGAGGGTGAATTCTGGGCCAGCACCACCCAAAAGGGAGAATTCTTTCGGGGACAATTCTTCTTACCAGGGAGGTAGGGGTG
GAGGGAGTATGGACAGTTCCAACAGAGTCTACGTAGGAAACCTTGCATGGAGTGTTGACCAACAGCAACTTGAGACCTTGTTCAGTGAGC
AAGGAAAGGTCGTGGATGCCAAAGTAGTCTATGATAGAGATAGCGGTAGATCAAGGGGCTTTGGATTTGTAACATACAGTTCCGCTAAGG
AGGTCAACGATGCAATTGAAAGCTTGGATGGTGTTGACCTAGGTGGCAGGGCCATCCGTGTAAGTCCTGCTGAAGCTCGTCCACCCAGAC
GTCAATTCTGAAGATTGTAGCCAACATCTTTTTGACCGAGAAAAGGCTTGAGGGTCCAGGAGATGACGATAGTTGCAGAAATGAATGAGT
TATGAACTTTGCAACAGCTATCTTAAACTTGCGCGGACAAACTACTCTCTACTTCTGGACTAACTAGAGCTCTCAAGTAAATTAGTTTTC
GTAATGTATGTTCTGAAATTGCCTCAGGAAGAAATTCTGATCTTGTAATATGATTCTATCCATCACTTGTTGACAGACAAGACAATGAAA
AAGTTTGATACTCTTCGAAAATGTATCTTAGCGCGAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF389431	single-stranded DNA binding protein precursor	DNA binding

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	9
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	22060	RNA_rec_mot	87
5	56714	RNA_rec_mot ELAD_HUD_SF	25
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118541	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	59
5	129458	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	20

Preceding Unigenes (1)

Unigene	Build
SGN-U244075	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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