Sol Genomics Network

Unigene SGN-U269368

Unigene Basic Information

Unigene ID:	SGN-U269368
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269368
mRNA sequence:	Length: 1866 bp

>SGN-U269368 Solanum tuberosum #4 (32 members)
GTTTTTTTCCTCTATTTTCTTTCTCTCTGTACTTTTCTTCTTTCTGTACCAAAAAAAAATGAACAGAAACCATTGAACACTCTATAAAAA
AAAAAGTAAAAAAAGGAAGCCATAGCCATGGAGTTTCAGGACCACTTTTCTCAAGAAATGGCTCTTCATCAACAACAACAGCAACAACAG
CAGCAGCAGCAACAAAACGCGGTATTGCGTTCCATGTTACCTGAATCTCCTCATCACGACGTTCGAAAATCACCTCCGACTTGGCTCAAC
ACTTCTCTCCTTCGTCAACAACACAGTCAGTTCGCCAACGCATCCTCACCTTCCTCAGCCGCAGCTGCAGCTGCCGTCGCCGGAGGGAAC
AATTTCCTTCATCTCCAGACATCTAACTCCGACTCGTCAAACTCTAACCAGTGGCTCTCACCTACTGCGGCTGCCGGCGGTGGAGGTGGA
GGTACCGGCGGTGGAGGTGGGCATAATGATGAGTTATCGGAGTCGATGAATTTTGCTAAGAAGATGAGTCAACAGCATAGCGGAGGAGGA
GAAGAAAACAACAATAATAATAATGAAGAGGAGAACTCGTGGGAGAGAGAGAAATGTAAAGCGGATATATTGAATCATCCTTTATACGAT
CAGCTACTGTCGGCACACGTTTCGTGCCTGAGAATTGCAACGCCGGTGGATCAATTACCGAGGATTGACGCGCAGCTAGCTCAATCGCAA
AACGTGGTAGCCAAATACTCTGTACTTGGACAAGGTCAACCGCCTCTAGATGATAAAGACCTCGATCAATTTATGACACATTATGTTCTG
TTGCTCTCTTCCTTTAAAGAACAACTGCAACAACATGTCCGTGTCCATGCAATGGAAGCTGTCATGGCTTGCTGGGAGCTTGAACAATCT
CTACAAAGCTTAACAGGGGTAGCACCAGGTGAAGGTACAGGAGCAACCATGTCTGATGATGATGATGACCAGGCTGATAGTGACACAAAC
TTTTTGGATGGAGGTTTTGATGGACCAGATAGCATGGGATTTGGTCCTCTTGTACCTACTGAAAGTGAAAGGTCCTTGATGGAGCGTGTT
AGGCAAGAACTCAAGCATGAGCTCAAACAGGGCTATAAGGAAAAGATTGTCGACATTAGAGAGGAAATTTTACGCAAACGAAGAGCAGGA
AAGCTGCCTGGTGATACTACATCTGTCTTGAAAGCTTGGTGGCAATCACATTCTAAGTGGCCTTATCCAACTGAGGAAGACAAAGCACGA
TTAGTGCAAGAAACAGGTTTACAACTGAAGCAGATAAACAATTGGTTTATTAACCAAAGGAAAAGGAACTGGCACAGCAATCCATCAACA
TCTTCTTCTCAGAAAAGCAAACGCAAGAGTGCAGGTGAAATCAAGCAGTAAAAAAAGACATGATGAAGAAGAATATGAAGTTTTTTGTGT
TCTAGCAAGTATAAAGCTTCATCACAAAACCAAAACATGAATGGCTAGAATTTGGGAAATTGAATTAATGAGTTTTTGGCTGTGTGAAGG
AATTGACCACAGAAAGTTCCCAAGCTGACCTGGTTGACTAAGATATGCTTTAGAAAAAAAGAGAGTATAGATACTTGTGAAAGTAATACT
AGCACTTTCTTATTTTTATGAGGTTAATTTTCTATGTTTTAAGCCAAATATTTTAGCACAACAGGTTTCAGTTTATATAATTTTGTTTTG
TATCAAGTATTTTGGTGGCTATGTTGTAATTTTGAATGCTAGTGTTACTCATTTTTGTGAATAGAAGTTGTAGATTATAATTACTTGTTC
CACTGAACTGTGTTGATTGAGTTATAGTTCTACTTATATATTTTACTTATTCTCTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	7
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	116	Homeobox	112
2	22285	Homeobox KNOX2 ELK KNOX1	38
5	56862	Homeobox KNOX2 ELK KNOX1	21
1.1	101481	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	108
2	118653	KNOX1 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) KNOX2 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like ELK - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634)	39
5	129409	KNOX1 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) KNOX2 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like ELK - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634)	22

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U244459	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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