Sol Genomics Network

Unigene SGN-U269641

Unigene Basic Information

Unigene ID:	SGN-U269641
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269641
mRNA sequence:	Length: 1452 bp

>SGN-U269641 Solanum tuberosum #4 (29 members)
GGTGTTTGGTTTGTGTGCTTGTGGCCATCATGCGATAAATGAAGGATGGGAGGTCCCCTGTTCCCTACAAATTGAGTTAGCAAAAGAGAA
GGGCCAACCATTGAAGATAAGCAAAGCCGCTATGAGAAACCAAATCGGACACGTGTCCACCTGATATTTCATTCTTGATTTTCCTCAAAA
ATAACAGTTTTCGGTTCTCGTCTTGGAAGTCTCTCAAAAGGGTGGTTGGAATTTTGAGCTGTGGTGCTTTCAAATTGACAAAGTACCAAC
TTTTATCCTCAATTTTCAACAAGGGAAAAGTTTGCTTCAAGAAAAAAAAATAAAAAATCAATGGCGACTGCTTCTTCTTTGGGTTCATCA
ACTCTGTTACAATCCCAAATTAGTGGATTTGGCGGGAGTCAAAAGCTTCAAAAGATTTCTTTCTCCAACCCCAATTCACTCACTTTCACC
AGGAGGAGAATTCAAACTGTGGTGAACGCTTCTTCTCGGGTGGATAAGTTCTCAAAAAGTGACATTATTGTTTCTCCGTCCATCCTTTCT
GCTAACTTTTCTAAATTAGGAGAGCAGGTGAAAGCAATTGAGCAGGCAGGCTGCGACTGGATTCATGTAGATGTGATGGACGGTCGATTT
GTTCCAAATATAACTATTGGACCCCTTGTAGTTGATTCCTTGCGCCCTATCACAGATCTACCATTGGATGTGCATCTGATGATTGTCGAA
CCTGACCAGAGAGTACCTGACTTCATAAAAGCAGGTGCTGATATTGTCAGTGTTCACTGTGAGCAATCTTCTACGATCCACTTGCATCGT
ACAATAAATCAGATTAAAAGTTTGGGAGCAAAAGCTGGGGTTGTCCTCAATCCTGGAACCCCTTTAACCGCAATTGAATATGTCCTTGAT
GCTGTTGATCTGGTGTTGATTATGTCTGTAAACCCTGGATTTGGGGGACAGAGCTTCATTGAGAGTCAGGTCAAGAAAATCTCGGACTTG
AGAAAAATCTGCGCTGAGAGGGGATTAAACCCTTGGATTGAAGTTGATGGTGGAGTTGGTCCCAAAAATGCTTACAAGGTCATTGAAGCT
GGAGCCAATGCCTTGGTAGCTGGTTCTGCTGTCTTTGGAGCTCCTGATTATGCTGAAGCTATTAAAGGGATCAAGAGAAGCAAAAGGCCT
GAAGCAGTTGCTGTATGAGATTTCTGTATGACACAGCGATACGTAGTAGCAAAGCACAAATAGTTGCGAGACTGCAAGCATGGTTCACTC
TGCAACCTACACAAAGAGGATAAATAAAATAACCCACCTCTCGGATGTTGTGTAATACTATATGTTGTATAACTTTTCTTGCATAGGGAA
CAAGATGAATCTGTACTGAATATCCAATTTTCAAGATGACATTTTATAGATGTTAATGAGTTAGTGTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Z50098	pentose-5-phosphate-3-epimerase	pentose-5-phosphate-3-epimerase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	4
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	6
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1443	Ribul_P_3_epim OMPdecase	13
2	23378	Ribul_P_3_epim OMPdecase	13
5	59452	Ribul_P_3_epim PcrB TMP_synthase OMPdecase NanE	6
1.1	102503	Ribulose-phosphate 3-epimerase - Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750) - Biological Process: carbohydrate metabolism (GO:0005975) Ribulose-phosphate binding barrel	13
2	119966	Ribulose-phosphate 3-epimerase - Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750) - Biological Process: carbohydrate metabolism (GO:0005975) Ribulose-phosphate binding barrel	11
5	134091	Ribulose-phosphate 3-epimerase - Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750) - Biological Process: carbohydrate metabolism (GO:0005975) Ribulose-phosphate binding barrel	4

Preceding Unigenes (1)

Unigene	Build
SGN-U244488	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: