Sol Genomics Network

Unigene SGN-U269890

Unigene Basic Information

Unigene ID:	SGN-U269890
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269890
mRNA sequence:	Length: 1641 bp

>SGN-U269890 Solanum tuberosum #4 (26 members)
TTCTTGTACCACAACAATTACTCTTCCATCTTCCTTATCTCTTTAGCTCTTTCTTCCTTCATTCACATTTTACACATCAAGAATATTCCA
AAAATATATATATTTTATATTTTTAAACACCCTTTTCTCTCCTTAACCTAATTTTTTTCCTTTTTTGGAAAAAAAATGGGAAGTGAAAAA
ATGATGAAAATTAATATCAAAGAATCAACACTAGTGAAACCATCAAAACCAACACCAACAAAGAGAATTTGGAGTTCTAATCTGGATTTA
ATTGTTGGAAGAATTCATCTTTTGACTGTTTATTTTTATAAACCAAATGGATCTTCAAGTTTCTTTGATAATAAAGTTATGAAAGAAGCA
TTAAGTAATGTTTTAGTTTCATTTTACCCAATGGCTGGAAGATTAGCTAGGGATGAACAAGGTAGAATTGAAGTTAATTGTAATGGTGAA
GGTGTTTTATTTGTTGAGGCTGAAAGTGATTCATGTATTGATGATTTTGGTGATTTTACACCATGTTTGGAACTTAAGAAACTCATTCCT
AGTGTTGAAACTTCTGGAGATATCTCAACCTTTCCACTCGCTATATTTCAGGTTACTCGTTTCAAGTGTGGTGGAATCGCTCTTGGTGGT
GGAGTATTCCACACGTTATCCGATGGTCTCTCATCCCTCCACTTCATCAACACGTGGTCGGACATCGCCCGTGGCCTCTCCGTCGCAGTC
CCCCCATTCATCGACCGGACGCTCCTCCATGCACGGGACCCACCAACATCTTCTTTCGAGCATGTTGAGTATCATCCCCCACCTACCCTC
ATCTCATCAAAAAAAGGTGAGTCCACAGGCCCAAAGTCTAGTACCACGGCCATGTTGAAATTCTCAAGTGAACAAGTCGGACTTCTTAAG
TCTAAGTCCGAAAACGAGGGCAGCACTTATGAAATCCTCGCGGCCCATATTTGGCGATGCACGAGCAAGGCACGTGGATTGGCAGATGAT
CAATTGACCAAATTACATGTGGCCACTGACGGTAGGTCAAGGCTTTGCCCTCCCTTGCCACCGGGTTACCTAGGAAATGTGGTGTTCACG
GCCACACCAATAGCTAAATCATGTGAACTTCAATCAGAGCCGTTGAGGAATTCCGTTAAGAGAATTCACAATGAGTTGATCAAAATGGAC
GATAATTACCTAAGATCAGCGTTGGATTACCTCGAATTACAACCTGATTTATCGACCCTAATCCGGGGCCCGACTTACTTTACTAGCCCT
AACCTCAATATTAATAGTTGGACTAGGTTGCCTGTCCATGAGTGTGATTTTGGATGGGGTAGGCCAATTCATATGGGACCAGCTTGCATT
TTATATGAAGGGACAATATATATTATACCAAGTCCAAATACAAAAGATAGGAACTTGCGTTTGGCTGTTTGTCTAGATCCTGATCACATG
CCACTATTTGAAAAGTATTTGTATGAATTTTGAGATATTTTTCATATGGAAAAAAGTCAAGAATGTACAACACAAATTGTGGTGTGATTT
AGTTCAAGTCCTTTTTTTTTTAGTTTTGAGATATTTTCCAAATTCTTTATTAGGAATTTGATTGTGTAATTGATAATGTCTTATTAAGCT
AAATCTCCATAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ200363	hydroxycinnamoyl CoA quinate	hydroxycinnamoyl CoA quinate

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	4

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	49	Transferase	234
2	22054	Transferase	93
5	57077	Transferase	17
1.1	101413	Transferase	242
2	118498	Transferase	79
5	129230	Transferase	29

Preceding Unigenes (1)

Unigene	Build
SGN-U244445	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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