Sol Genomics Network

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Unigene SGN-U269931

Unigene Basic Information

Unigene ID:	SGN-U269931
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269931
mRNA sequence:	Length: 1359 bp

>SGN-U269931 Solanum tuberosum #4 (26 members)
GTTATTGTGAACCTTCATCAATTAATCATAATGGCTTCAACTACCCTTTATACTTTGGCTTCTTCACTTGTACTAATCCTTTCTATTTTT
GTTTCAATCCATTTTCAAGTAACAAAAGCTCAAGGTACTCAACCAATTGTGAAAGGTCTTTCATGGACTTTTTATGACTCCATTTGTCCC
AATGCTGAATCCATCATCAGGAGGCGACTCCAGAATGTTTTCCGGCAGGATATCGGTCAGGCCGCCGGCCTTCTTCGTCTTCACTTCCAT
GATTGCTTTGTTCAGGGTTGTGATGGATCGGTACTATTAGATGGTTCAACCAGTGGACCAAGTGAGAAAGATGCACCCCCCAACTTGACT
TTAAGACAGCAGGCTTTTCGGATCATCGAAGACCTTCGCCGCCGTGTCCACCGGGACTGCGGTAGAGTCGTTTCTTGTGCTGATATTACT
GCTATTGCTGCTCGTGACTCTGTTTTCTTTTCGGGTGGCCCGGACTATGATCTACCATTAGGAAGAAGAGACGGACTCACTTTTGCAACA
TTAAATGAAACCCTAGCCAATCTTCCACCACCTTCATTCAACACAAGTTTAATTCTAGCTTCACTTGCTACTAAAAACTTCACCCCAACA
GATGTTGTTGCACTTTCTGGTGGTCACACTATTGGTATTAGTCATTGTACTTCTTTCACAGAGAGACTTTACCCTAATCAAGATTCATCC
ATGGATAAAACATTTGCCAACAACCTTAAAATAACATGTCCCACTACAAACTCCACGAACACTACTGTCCTAGACATACGATCACCTAAC
AAATTTGATAACAAGTACTACGTTGATCTCATGAATCGACAAGGGCTTTTCACATCCGATCAAGATTTGTATACGGATAGAAGGACTCGA
GGGATCGTTACGAGTTTTGCTATCAATGAGTCACTTTTCTTTCAGGAATTTGTGAATTCCATGATCAAGATGGGACAATTGAATGTGTTG
ACTGGAACACAAGGTCAAATTAGGGCAAATTGTTCAGTCAGGAATTCAAATAATTATAATTTGATACTTCCTTCTTCTCTTGGAGATCAA
GAGAAACAAGGAACTTGGTCAGAAATATAGCCCTTTTGTGGTTATTTCTACATATGTATGTTGTGTTTTTTGGAGCAAAATATAAGGGTG
GTGGGCCCTTGTAGTTATCGTAGCTTATGGCTATAGCAATAGAAAGGCCCCATCGAAAAGCTAATAATTTTATGTGTCGTCTTCTTGTGC
AAGTATGTGTGGACACATAAGTGTTTTGTTTGAATAAACCTATGTTATTCCTCTATTAAAAAAAAACTTTATTTGTTTACGAGGGTGAAG
ATTTTAATT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
prx2	peroxidase; prx2 gene

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	23	Peroxidase	342
2	21984	Plant_peroxidase Peroxidase	274
5	56259	Plant_peroxidase Peroxidase	265
1.1	101394	Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase	328
2	118419	Haem peroxidase Plant peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	263
5	128931	Haem peroxidase Plant peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	255

Preceding Unigenes (1)

Unigene	Build
SGN-U244870	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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