Sol Genomics Network

Unigene SGN-U269995

Unigene Basic Information

Unigene ID:	SGN-U269995
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269995
mRNA sequence:	Length: 1453 bp

>SGN-U269995 Solanum tuberosum #4 (26 members)
TGAAAGTGTTGTTCTTGGTATAGTTGACCCAATTCTCTTCTTGTGCTGAGTTTGTTTGAAGCTCCGGTGATCTCTTTCTTCTCCGGCGAA
ATCTACTTGTATTCTTCAAAGTTGTATGTGATTTGGGTGTTGTTCATTTTGGGATGTTGAGTTTACTTAGTTTTGGCCGTGTTCTGATTC
AATAACTGACCAGAAAAAAAGAAGAAGACTTGGTATAGTTGACCCAATTCTCTTCTTGTGCTGAGTTTGTTTGAAGCTCCGGTGATCTCT
TTCTTCTCCGGCGAAATCTACTTCTAAGTAGCTTGGCAAAATGTCAGGGCAAACCAACCGCTTGGTTGTCGTCCCCACAGTTACGATGCT
TGGAGTTATTAAAGCTCGCCTTGTTGGAGCAACAAGAGGCCATGCTTTGCTGAAAAAGAAAAGTGATGCTTTGACTGTGCAGTTCCGTCA
GATTTTAAAGAAAATAGTATCAACAAAGGAATCGATGGGAGATGTCATGAAAAATTCCTCATTTGCTCTGACAGAGGCAAAATATGCTGC
TGGTGAGAACATCAAGCACGTTGTCCTTGAAAATGTCCAGACTGCTACTCTGAAAGTTCGATCACGGCAGGAAAATATTGCTGGGGTGAA
GCTCCCCAAGTTTGAGCACTTTTCTGAAGGAGAGACCAAGAATGACCTGACTGGATTAGCTAGAGGTGGGCAACAGGTACAAGCCTGCCG
TGCTGCTTACGTGAAATCTATTGAATTACTTGTTGAGCTTGCATCTTTGCAAACATCATTCTTGACTCTCGATGAGGCAATCAAGACAAC
AAATCGGAGGGTCAATGCGTTGGAGAATGTTGTGAAGCCTCGGTTGGAGAACACAGTTCTTTACATCAAGGGGGAACTTGATGAACTGGA
AAGGGAGGACTTCTTCCGTTTGAAGAAGATACAAGGTTACAAGAAGAGGGAGGTAGAGAAACAGATGGCCGCTGCCAGGCTATATGCAGC
GGAGAAGGCTGCTGAAGATATTTCTTTGAAGAGAGGTATTTCGCTTGGTTCAGCCCATAACTTACTGTCCCATCCTTCACAGAAAGATGA
GGATATTATTTTCTAATGTGGAGGTCAGCTTTTATTAGTCACGTCTGTTGTCAAATATAGATGGATAATATTATGAGATGGAGAGATTTT
TCCTGTTCAAATAAGAGCTCTGTGCATGTTTGTACTTAATGAACTCTACGGGGAGCTGCCTCATTGGTTAGTTTTGTGTGCTTTTTTCAA
TTTTTTGATTCAGTGACAGTCTTTTTTACCTGGAGAGCTGTTGGATGGAAATTTTATTTTTGAATATGTTGCATAAAGCTTATCTGATAT
TTCCTGTCTCAAAATTGTGTCATGTATTTGATAATAATATTCTCTCCCTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAATACTCGAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	6
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2702	ATPsynt_Dsub	6
2	25950	ATPsynt_Dsub	5
5	59930	ATPsynt_Dsub	5
1.1	103952	ATPase V1/A1 complex subunit D - Biological Process: ATP synthesis coupled proton transport (GO:0015986) - Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469) - Molecular Function: hydrogen-transporting ATP synthase activity rotational mechanism (GO:0046933) - Molecular Function: hydrogen-transporting ATPase activity rotational mechanism (GO:0046961)	5
2	123583	ATPase V1/A1 complex subunit D - Biological Process: ATP synthesis coupled proton transport (GO:0015986) - Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469) - Molecular Function: hydrogen-transporting ATP synthase activity rotational mechanism (GO:0046933) - Molecular Function: hydrogen-transporting ATPase activity rotational mechanism (GO:0046961)	4
5	133755	ATPase V1/A1 complex subunit D - Biological Process: ATP synthesis coupled proton transport (GO:0015986) - Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469) - Molecular Function: hydrogen-transporting ATP synthase activity rotational mechanism (GO:0046933) - Molecular Function: hydrogen-transporting ATPase activity rotational mechanism (GO:0046961)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U244441	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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