Sol Genomics Network

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Unigene SGN-U270166

Unigene Basic Information

Unigene ID:	SGN-U270166
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270166
mRNA sequence:	Length: 1307 bp

>SGN-U270166 Solanum tuberosum #4 (22 members)
GAAATCTCAGTAGAATCCACACCAGCAGATCCAATTCTCTTCCCCATTTGTGCCTACTTTCTTCCTAAACCCTAACCCTAGTTCTCTCCC
TATTTGGGAATTTCATTTCTTCGCTTAGAAATGGCCACTGAAGAACCAGTCATCGCTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAA
CCTGTCAAGGATGAGGCAAATCCTCCGGCTAAGTCTGGGAAAGCAAAGAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCGAGGAAGAAA
AGTGCTCCTCCGGCTCATCCTCCTTACTTTGAGATGATTAAGGATGCGATTGTGACATTGAAGGAGAGAACTGGATCCAGCCAGTACGCT
ATTACCAAGTTCATTGAGGAAAAGCAGAAGAATCTTCCATCCAATTTCAAAAAATCATTGCTTATCCAGTTGAAGAAGTTTGTTGCTTCT
GAGAAGCTGGTGAAAGTGAAGAACTCTTACAAGCTTCCATCGGGTTCTAAGCCTGCTGCTGCTGCTGCCCCGGCGAAGAAGAAGCCTGCT
GCGGCAAAGTCAAAGCCCGCTGCTAAGCCCAAGTCCAAGCCTGCTGCGAAACCTAAAGCCGCCGTCAAGCCTAAGGCAAAGCCAGCTGCA
AAGGCGAAACCCGCTGCCAAGGCAAAGCCTGCTGCCAAGGCAAAGCCTGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCTGCTGCC
AAGGCAAAGCCGGCTGCTAAGCCGAAGCCCAAGGCGGCGGTTGTTGCCAAGCCCAAAGCTGCTGTTAAGCCCAAGGCTGCTCCTGCGAAA
ACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGCCAGCTAAGGTTGCAAAGACAGCTACCAGAACGACTCCAAGTCGGAAA
GCTGCACCAAAGGCAACACTTGCCAAAAAGGAGCCGGCTAAGAAGGCACCTGCGAAGAACGTGAAGTCGCCGGTGAAGAAGGTTACCCCA
AAGAGGGGAAGGAAGTAGAAGCATAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTGGGTTGATTTGGGTT
TTTTTACCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTATTCTACAGTGTTTAGATTTTTTTTTCTTTTTAAT
TCCGTTTAGGGATTTGGAACAGATTCTGCTCTGTACTGATATATCATTCTGCTTATGAGGAATTAGAGTTTATGATGCCCTAATCTTATA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	10
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	110	Myb_DNA_binding	121
2	22376	Histone_H1/H5	32
5	56797	Linkerhist_N Histone_H5 Histone_H1/H5	22
1.1	101473	Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634)	112
2	118777	Histone H5 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) Winged helix repressor DNA-binding Histone H1/H5 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) Linker histone N-terminal - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001)	30
5	129393	Histone H5 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) Winged helix repressor DNA-binding Histone H1/H5 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) Linker histone N-terminal - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001)	22

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U244633	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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