Sol Genomics Network

Unigene SGN-U270421

Unigene Basic Information

Unigene ID:	SGN-U270421
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270421
mRNA sequence:	Length: 1739 bp

>SGN-U270421 Solanum tuberosum #4 (20 members)
ATTCAAAGAAATTTAAGGGTAACCTGTACTTCTTCCAATTCCTTTACCGCCATCATACTTCTCCTATACTTCTCCGGTGTTCGCAGCTTC
TTTGCTGCCATTGAAGTCTCGAGTTCTCCAATTTTTTGAGCTTGAAGCAGCTTTTTCCTTGGGTTGCCATGAACACGTCTTGTGGAGCAA
ATTTGGAACTATCGAGGTGCATTGCTGCATCCCCTGTTTGTCATTTTAAATCCTCGATCTTTGAGCCAAGATCATGTGTACCCAAGCTCC
AAGACTTCTCAAAGAAGCTATTGCCTTTATGCAAAGATATAAATGCTAGAAGTAACAGGGAGAGAAGCATTCCATACTCTGTTACTTGTA
GTGCCAGTCAGGTTGACACTGCTGCAGATGAGCCCAGCAGTCTTACATATAAGGATGCTGGTGTGGACATCGATGCAGGATCAGAGCTTG
TGAAGAGAATAGCCAAAATGGCACCTGGAATTGGAGGATTTGGCGGACTCTTTCCATTAGGGGATTCATATCTTGTGGCTGGTACTGATG
GTGTGGGGACAAAACTTAAGTTGGCATTTGAAACGGGAATTCATGATACCATTGGGATTGATCTGGTTGCGATGAGTGTTAATGACATTG
TCACTTCTGGAGCAAAACCTTTATTTTTCCTTGATTATTTTGCAACTAGCCACCTTGATGTTGACCTTGCAGAGAAGGTCATAAAAGGCA
TTGTGGATGGTTGCCAGCAATCTGACTGTGCTCTTCTAGGGGGAGAGACTGCAGAGATGCCAGATTTCTATGCCGAAGGTGAATATGACC
TCAGTGGGTTTGCTGTGGGCATTGTGAAAAAGGATTCAGTTATTGACGGGAAAAATATCAAGGTTGGAGACGTTCTTATTGGTTTACCAT
CTAGTGGAGTTCATTCAAATGGGTTTTCTCTTGTTAGAAGGGTTCTGAAGCAAAGTGGTCTTTCTTTGAAAGACCAGCTTCCTGGTGAAT
CTATTACACTTGGTGAAGCTTTGATTGCCCCAACTGTTATATATGTTAAACAGGTTCTTGATATTATTAGCAAAGGAGGGGTTAAAGGAA
TAGCCCACATTACCGGAGGTGGCTTCACTGACAATATCCCTCGAGTATTTCCTAAAGGCCTTGGAGCCCTTATTTACGAGGGCTCTTGGA
CAATTCCTCCTGTTTTTAAATGGATTCAAGAGGCTGGAAGAATAGAAGATGCTGAGATGATGCGAACTTTCAATATGGGTGTGGGTATGG
TCCTTGTAGTAAGTCCAGAAGCAGCTGATCGGATACTTATGGAAGTACAGAAGACAAGCATTGCATACCGGATTGGTGAGGTTGTAAAGG
GTGATGGAGTAAGCTATAGCTGAAAGCTACGCAGGTGGTCATCGGAGGATAGACATGACGTGATGAGAGTTTTTTTCTCCTACCTTCGAT
TAAGAGTTTGAAATTTAGGAGCCTCTCTTATCGATCGTGTTTATGGATCTGTCTAACAACCAATGCATAGACTCTTAAAGATGTGTTGTG
TTATGTGTATTAGTGTGTCATTAGTTACATCTGTTAGCCATGAGGAGGATGTAGACAACTTCAACAGAGTTTTGCATGGAGTTTAGCAAA
TCATTTCCGCTATATTCCATTTTTATCAAAAGTGTCTTCAGATAAGTGCTTCTTACACCAACTCTATTCTATTTTTTCCATTGCAGGACA
GCCAAAATGGTTGAGATTATACCAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
purm	5'-aminoimidazole ribonucleotide synthetase

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2019	AIR_synth ThiL Melittin PurM_cligase	9
2	24868	AIR_synth ThiL Melittin PurM_cligase	7
5	58912	AIR_synth ThiL Melittin PurM_cligase	7
1.1	103950	AIR synthase related protein - Molecular Function: catalytic activity (GO:0003824) AIR synthase related protein C-terminal Phosphoribosylformylglycinamidine cyclo-ligase - Molecular Function: phosphoribosylformylglycinamidine cyclo-ligase activity (GO:0004641) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: 'de novo' IMP biosynthesis (GO:0006189)	5
2	122513	AIR synthase related protein - Molecular Function: catalytic activity (GO:0003824) Phosphoribosylformylglycinamidine cyclo-ligase - Molecular Function: phosphoribosylformylglycinamidine cyclo-ligase activity (GO:0004641) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: 'de novo' IMP biosynthesis (GO:0006189) AIR synthase related protein C-terminal	5
5	132713	AIR synthase related protein - Molecular Function: catalytic activity (GO:0003824) Phosphoribosylformylglycinamidine cyclo-ligase - Molecular Function: phosphoribosylformylglycinamidine cyclo-ligase activity (GO:0004641) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: 'de novo' IMP biosynthesis (GO:0006189) AIR synthase related protein C-terminal	5

Preceding Unigenes (2)

Unigene	Build
SGN-U245495	Solanum tuberosum #3
SGN-U265561	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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