Sol Genomics Network

Unigene SGN-U271338

Unigene Basic Information

Unigene ID:	SGN-U271338
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271338
mRNA sequence:	Length: 1748 bp

>SGN-U271338 Solanum tuberosum #4 (14 members)
TGAGAGTATAGCAGAGTAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACC
ACCTTCAGCCGCCGCAGCTGCAGCAGCAGCAGCAGCAGCATGTGAATCGTGAACAAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGTCG
CCGGAGCACGACCGGAAATGGAATCCGAAAAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCA
CCACTATTGGAGGCAAGAATGGAGAACCAAAAAGGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGT
TTCAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGA
TGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCA
TGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACA
TGTATCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGAATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTTGATC
CTCTGACCCATCAAGTCAAGCTATGTGATTTTGGAAGTGCAAAAGTCCTGGTGAATGGTGAAGCAAATATTTCGTACATTTGCTCTCGCT
ACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAATATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTC
TTCTGGGGCAGCCGCTCTTTCCTGGCGAAAATGCGGTAGACCAACTGGTGGAGATCATCAAGGTCCTTGGTACTCCTACTCGGGAAGAAA
TTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTCCATAAAAGAATGCCTC
CTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCACTAGAAGCATGTGCACATTCATTCTTTG
ATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGTTAACTGGAGCTTCAC
CTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAGTTGTACTAAT
GCAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTATGGATTAATGTAACCATGCATTTTGGCTTAACCAGTGGCTATGT
ATGCACGTAAAAGTTGTATGTGTATAGTCGCTGTTTGGCTTACAAGGAAGTGATCCTGCCTCAACTTATGTCCTCTTTTAGCTAATAGCA
GACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGATTTCAGATAGAAGTATAAAATGATAAATATTGTAATGCCTTAGTTAAGCA
GATTTCCTTGAGAGAGACCTTCTGAAGCACTAGGACTTGTAGCTTTTGGTTGTAGTAATATTTATATGCAAGTTGTTTTTAGCTCTCTTT
TTATTTTTGAATGTAAGGCGAATAAGATTTTCTCTTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2	Prot_kinase	1610
2	21980	Prot_kinase	311
5	56349	Prot_kinase Ser_thr_pkin_AS	63
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118420	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	253
5	129072	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	47

Preceding Unigenes (1)

Unigene	Build
SGN-U245773	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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