Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577555 in the current build, Tomato 200607 #2

Unigene SGN-U312336

Unigene Basic Information

Unigene ID:	SGN-U312336
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312336
mRNA sequence:	Length: 2592 bp

>SGN-U312336 Tomato 200607 #1 (173 members)
TGATATTATTTGGGAGTAAATGTAGAGACGACATGACGTAACAATACGAACATTTCTAAATGCTCGTTACAATAGAGTTTCTATAGGAGA
AACATAAGCCTAAAGAAAGAAATAAAGAACGACGTTTCCAGTTGTGAAAGAACATAGTTTATGCAACCATAGCAGAAAAACATGAATAAG
AATTGAGCACACTAAAGCTAAATTGCTCAACACACAACAGAGTAATACATTTTACAAACACAGGTCTTAAAAACTTAACATCTGTGTTGG
CACATTGCTGAATAGATCAGGGGACAACAGCAGAAATGAGAGGATACATCAGGGCCTCGTGCCGTATTTGCAGTTTACCACTATCCAAAA
TAAACATGACCACCACATCTGCTACTGCAGTGCTGAATGGCTTGAGCTCCTCTTTCTTGACTGGTGGCAAGAAAACTCAAGCCTTGTTAG
GTGCTCATGTTACTGCCAGAGTTACCACTCCCAAGAGGTTTGTTGTGGCAGCTGCTGCTGTTGCTCCAAAGAAATCTTGGATTCCTGCTG
TAAAATCTGGTGGCAACTTGGTTGACCCCGAGTGGCTCGATGGCTCGCTCCCTGGTGACTTTGGTTTTGACCCACTTGGTCTTGGCAAGG
ACCCTGCATTCTTGAAATGGTACAGAGAAGCTGAGCTCATTCATGGCAGATGGGCAATGGCTGCTGTATTGGGCATCTTTGTTGGTCAAG
CCTGGAGTGGCATTCCATGGTTTGAGGCTGGTGCTGATCCTGGCGCTATTGCACCTTTCTCTTTCGGCTCACTTCTTGGCACTCAGCTTC
TCCTCATGGGTTGGGTTGAGAGCAAAAGGTGGGTCGACTTCTTCGACAATGACTCTCAGTCTATAGATTGGGCCACTCCATGGTCCAAGA
CTGCTGAGAACTTTGCCAACTTCACAGGCGAACAGGGTTACCCTGGTGGCAAATTCTTTGATCCTTTGGCATTAGCTGGTACACTTAACA
ATGGAGTTTACGTCCCTGACACAGAGAAGCTTGAGAGATTAAAGCTTGCTGAGATCAAGCATTCTAGACTTGCTATGTTAGCCATGTTAA
TTTTCTATTTTGAGGCTGGACAAGGGAAGACACCCCTTGGAGCTCTTGGTTTGTAAGAGATTCACATTAAACATTTCACTGTGAAAGAGC
CGTTGAGTGTAGAAAGAAAGTAACCAAAGCTTGAATTTGTCACTTCAAGCTTTTTTCTTTGAGAAAATAATAGGCACTTTCTCCCATTAT
TTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTG
CTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTG
AAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCT
TTGTTGAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAA
ATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTA
GAGATGGTATTGTTGCTCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAAC
AGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGC
TAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATG
TACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTC
TAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCAT
ATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTG
GGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTA
TCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGT
TGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTAT
GAAACAAGTGTTAATTTGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (31)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	9
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	18
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	18
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	7
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	11
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	6
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	7
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	8
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	15
Solanum lycopersicum	cTOS	suspension cultures	8026	19
Solanum lycopersicum	cTSB	seed	1880	5
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3

mRNA member sequences (173)

Alignment image suppressed for unigene with 173 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 5 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101394	Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase	328
2	118419	Haem peroxidase Plant peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	263
5	129511	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U212734	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: