Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579512 in the current build, Tomato 200607 #2

Unigene SGN-U312538

Unigene Basic Information

Unigene ID:	SGN-U312538
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312538
mRNA sequence:	Length: 2225 bp

>SGN-U312538 Tomato 200607 #1 (175 members)
ATCGGCCGAAATGAGAATCTTCTGGACCTTTTAAAGTCTATCAATAATAATAATTCCAAAAAACAAAATGCAAAATATTAAGCCCTAGTC
TCTCTTTGTATACTTCACCAAACTTTGTCACTCTTTTCATTCCAAAACTCACCCAATCTCCTTATCCACTCACAATAACCCCTTTTCTTT
CTTCTTCTCTGCAATGGCTTCTGCTAATGCTATTTCCACTGCTTCTATTATCCCTTCTCCTTCTAAACAGGGGGGTTTGAAGAATAGGAA
GGTCAGCCAATTGCAGGGACAGAGATTTGGCAACAAGGGTGCAAAGAACCGATTTGTAGTCAAGGCCTGTGCTAAAGAAATTGCCTTTGA
CCAGAAATCTAGGAGTGCCCTGCAGGCTGGAATCGACAAGCTTGCTGATGCTGTCGGCCTGACTCTTGGTCCAAGGGGAAGGAATGTAGT
GTTGGATGAATATGGCACCCCTAAGGTGGTTAACGATGGAGTTACAATTGCTCGTGCCATCGAGCTACCTGATGCTATGGAGAATGCTGG
GGCTGCCCTTATCAGGGAGGTTGCAAGCAAAACCAATGATTCAGCTGGTGATGGAACAACAACTGCATCTGTTCTTGCTCGGGAAATCAT
TAAACTCGGTCTGTTGAGTGTTACATCTGGTGCAAATCCAGTGTCTTTAAAGAGGGGCATTGACAAAACTGTACTGGGTTTGATTGAAGA
GCTAGAAAAGAAGGCTAGACCTGTTAAAGGCCGTGACGACATCAAAGCTATTGCTTCAATCTCTGCTGGAAATGATGAAAGCATCGGTAC
CATGATTGCGGATGCAATTGACAAAGTTGGTCCAGATGGTGTGTTGTCCATTGAGTCATCCTCCTCCTTAGAGACAACTGTTCATGTTGA
AGAAGGAATGGAGATCGATAGAGGATATATTTCCCCACAATTTGTCACCAACCCTGAGAAATTAATTTCTGAATTTGAGAATGCTAGAGT
CTTGGTTACTGATCAGAAGATCTCAGCTATCAAGGACATTATCCCTCTATTAGAAAAGACAACTCAATTACGTGCCCCTCTCCTCATTAT
TGCCGAGGATATCACCGGGGAAGCTCTGGCCACTCTTGTTGTGAACAAGTTGCGAGGTATACTGAATGTTGCTGCCATCAAAGCTCCTGG
ATTTGGTGAAAGGAGAAAGGCTCTTCTGCAAGATATTGCCATTGTGACAGGAGCTGAGTACCAGGCAACTGATTTGGGCCTGCTCGTTGA
GAATACCCCAGTTGAAGCACTTGGAATTGCCAGAAAGGTGACAATTACCAAGGACTCAACAACCATCATCGCTGATGCAGCATCAAAGGA
CGAGATACAATCTAGGATTGCTCAGCTTAAAAAGGAACTGTCTGAGACAGATTCAGTGTACGACTCCGAGAAACTTGCTGAGAGAATTGC
CAAGCTTTCTGGGGGTGTCGCCGTCATTAAGGTTGGAGCTGCAACAGAGGCCGAGCTTGAAGACCGCAAGCTTCGTATTGAAGATGCAAA
GAATGCAACTTTTGCTGCAATTGAAGAGGGAATAGTACCTGGTGGTGGTGCTGCTTTTGTTCATTTATCAACTTATGTCCCTGCCATTAA
GGAGAAGATTGAAGATGCTGATGAAAGATTGGGCGCTGACATCATTCAAAAGGCATTGGTAGCCCCAGCATCTTTGATAGCCCAAAATGC
CGGAGTTGAAGGAGAAGTAGTCGTGGAGAAGGTGAAGGAAGCCGAATGGGAGATGGGTTATAACGCGATGACAGACCAATACGAGAATCT
CGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAGATGTGCCTTGCAGAATTCAGCATCAGTTTCAGGAATGGTGCTGACCACACA
AGCCATAGTGGTCGAGAAGCCAAAGCCTAAGGTTGCTGCACCTGCTGCTCCACAAGGACTTCAAGTGTGATCGATATAACTATCTTTGCT
AGGAAATTTTGTTGGTCTTGAGATGAACATCGACGTGGGGCTGGCTTGTTCGGGACAAGGTTAGCGTAGAACTACATGAGCGTATTGTTA
TTTTTAGAGCCCTCACATTTAGAACTTGTATTGATTGAATAATATCGTCGCTTGTTCTGGTAAACATAAAGACGAATGTCTGTCCTATAG
AACGGATAACAGTCTATTAGTTATTCATGTTCCTTTACCTTTTCAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	4
Solanum lycopersicum	LC	Leaf Mature leaves	5712	14
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	26
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	9
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	5
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	24
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	7
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (175)

Alignment image suppressed for unigene with 175 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (8)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118513	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	71
5	129005	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	70

Preceding Unigenes (1)

Unigene	Build
SGN-U212970	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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