Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577864 in the current build, Tomato 200607 #2

Unigene SGN-U313169

Unigene Basic Information

Unigene ID:	SGN-U313169
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313169
mRNA sequence:	Length: 1471 bp

>SGN-U313169 Tomato 200607 #1 (76 members)
GAGCTCGTCCTGGAGCAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGT
TTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTAC
TAGGCAGGAAATTTCAATCTGAATCCACGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTG
GCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTG
AACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGATTCGTCGTGGTCACCAGG
TTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAA
AGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTC
CTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGCACGCCATA
ATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGATTCGTGAAGGACTGCACTACAATCCTT
ACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGA
TGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGATGGGCTTCAAGTGGATATTTGTAC
TGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATT
AGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAAT
GGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGAT
TTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCT
CCAGATTTATAGTTTTGTGACTTGACATAAAAAAAAAAAAAACGTAAAAAGAACCTATTCCAAGGGTTACCAAAACGATTAATCAAATAA
GAATATTTAGTAGTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	9
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (76)

Alignment image suppressed for unigene with 76 aligned sequences.
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Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102259	Cytochrome c1 - Molecular Function: electron transporter activity (GO:0005489) - Cellular Component: mitochondrial electron transport chain (GO:0005746) - Biological Process: electron transport (GO:0006118) Cytochrome c region - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) Cytochrome c monohaem	18
2	119268	Cytochrome c monohaem Cytochrome c1 - Molecular Function: electron transporter activity (GO:0005489) - Cellular Component: mitochondrial electron transport chain (GO:0005746) - Biological Process: electron transport (GO:0006118) Cytochrome c region - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	18
5	129615	Cytochrome c monohaem Cytochrome c1 - Molecular Function: electron transporter activity (GO:0005489) - Cellular Component: mitochondrial electron transport chain (GO:0005746) - Biological Process: electron transport (GO:0006118) Cytochrome c region - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	18

Preceding Unigenes (1)

Unigene	Build
SGN-U213573	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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