Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576388 in the current build, Tomato 200607 #2

Unigene SGN-U313676

Unigene Basic Information

Unigene ID:	SGN-U313676
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313676
mRNA sequence:	Length: 1429 bp

>SGN-U313676 Tomato 200607 #1 (69 members)
GCACGAGAAAACCATCGCCAGTTGGAAAGTTACTTTCCATTGACGTCACTTTTGGGGTTGAGAGGGAGAAAATCTCAAAGTAACTAGGAC
CATCCGCCGGCTTCAAAACCTCTGCTCTCTCCTTATCTTCTTTTCTTCCTTCACTCTCTCTACCCTAGAGATATGTCTTCTCTTACCAAA
CCCTTAATCAAGAATTTATCAATGGCGACCAATTCTTGCCTTATCTCTCTTCCACCCTTCTTCACTACAACCAAATCCATGTCTTTTATT
TCAACCCCATTAAAACCCATCTCCCTTTCTTCCTCTTTATCTCTTAAAAAGACCACTACCCAATTCCCATCTATTGTTTCTGTAGTGGCT
GCTCTGCAAGATGATGACAGCAGTGTTGGCCTTGAAGATAAAGAACAAGGTGGGGAAGCGCTTAGCTTTGATTTTGCAAGTGTTGGTGAT
GCAGGGGAGAGTGATGAGGCTGAGGCTGAGGCAGAGGAGTATCAAGAACCTCCGGAAGATGCGAAATTGTTCGTTGGGAATTTACCCTAT
GATATAGACAGTGAGGGGTTGGCTCAGTTGTTCCAACAGGCTGGTGTTGTTGAGATTGCTGAGGTCATTTACAATAGGGAGACTGATAGA
AGTCGTGGATTCGGGTTTGTGACAATGAGTACCGTGGAAGAAGCTGAGAAAGCTGTAGTACTGTACAACCGTTATGATCTCAATGGAAGG
CTCTTGACAGTCAACAAAGCTGCTCGAAGAGGATCACAGCCAGAACGTCCACCTCGAACATTTCAGCCTACTTACAGAATCTATGTTGGC
AACATCCCATGGGACATTGATGATGCACGCCTTGAGCAAGTCTTCAGTGAACATGGTAAAGTAGTAAGTGCTCGGGTGGTTTATGACAGA
GAGTCTGGAAGGTCACGAGGCTTTGGTTTTGTGACAATGTCAAGTGAACCTGAGATGAGTGAAGCAATAGCCAACCTTGATGGACAGACT
TTGGATGGGAGGACGATCAGGGTAAATGCTGCTGAAGAAAGACCTAGGCGCAACACATTTTGATTTTGATCATATGTTTTATTTGTTCGA
TTGCATAGCAGTGGCAGTTGTGCAGTTATGAGCAGTTAGATTTTCATCAGACGTCTTTAATTTTGCTCTCTACTTGTAAGTTTTTATTTG
TTGATTACTTATATAGGGCACAGCGACTTTTTTTGTGTTCTTTCTTCTTTCTTTCTACCGCTCTTACCCTTTGGGGGGACTCTGAAGTAG
AGGATTGAATGCTGTAAGATTTTCAATTCTATTTGTGGTAGTTCTCATTTGCCGTTAGCTTTAAAAAAAAAAAAAAAAAAAACTGATTCA
GACATTTGGAAGCAAAATGGATTGGAAGCTTTACTATGATTAAAAAAAAAAAAAAAAAAAAAAAACCGAGACTAGTTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (26)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	6
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	11
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (69)

Alignment image suppressed for unigene with 69 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 2 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	125764		3
5	132781	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	5

Preceding Unigenes (3)

Unigene	Build
SGN-U213656	Lycopersicon Combined #3
SGN-U232577	Lycopersicon Combined #3
SGN-U232578	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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