Sol Genomics Network

Unigene SGN-U575256

Unigene Basic Information

Unigene ID:	SGN-U575256
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2036 bp

>SGN-U575256 Tomato 200607 #2 (85 members)
CAAAAATAGAACGTTGAAATTAGGACCAATGTCACGGATATAAAACCCCCACCAATCCGATCCAATTTCTCCACAACTCTCCCTTAAATT
TCTTCATCCAAAATGACACGTGTTGAAGATTTTTTCAGCAAACAAATCGATTTTTGTAAAAGGAAGAAAAAAATCTACTTGGCCATTGTT
GCCTCAGTCCTGCTGGTTGCTGCAGTAATCGGAGTAGTCGCCGGAGTAAAATCTCATTCGAAAAACTCCGACGATCATGCAGACATAATG
GCCATTTCGTCTTCAGCCCATGCTATTGTAAAATCTGCGTGTAGCAACACTCTACACCCCGAACTGTGTTACTCTGCGATTGTCAATGTT
TCTGATTTCTCAAAAAAAGTAACAAGCCAAAAAGATGTGATTGAATTGTCCTTGAATATCACTGTCAAAGCCGTTCGACGCAACTACTAT
GCAGTCAAGGAACTCATCAAAACTAGAAAAGGTTTAACCCCACGAGAAAAGGTTGCGCTGCATGACTGCCTGGAGACGATGGACGAGACA
CTCGACGAGCTCCACACTGCTGTAGAAGATCTGGAGCTATATCCCAACAAAAAATCATTGAAAGAACACGCGGAAGACCTGAAAACTCTA
ATAAGTTCCGCAATTACAAACCAGGAAACTTGCCTCGACGGTTTCTCTCACGATGAGGCCGATAAAAAGGTACGCAAGGTTTTGTTGAAA
GGCCAAAAGCACGTGGAAAAAATGTGCAGCAATGCTTTAGCTATGATCTGTAACATGACCGATACCGACATTGCAAATGAGATGAAATTA
TCGGCCCCCGCCAATAATAGGAAGTTAGTAGAGGATAACGGCGAGTGGCCGGAGTGGTTGTCCGCCGGCGACAGGAGGTTATTGCAGTCG
TCGACGGTGACGCCAGATGTGGTTGTGGCGGCCGACGGAAGCGGAGATTACAAAACGGTGTCAGAGGCGGTAGCAAAAGCGCCAGAGAAG
AGTAGCAAGAGGTATGTGATTAGGATAAAAGCTGGTGTTTACAGGGAAAACGTGGATGTGCCAAAGAAGAAGACGAATATTATGTTTATG
GGAGATGGCAAAAGCAATACAATAATCACAGCAAGTAGGAATGTGCAAGATGGTAGCACTACCTTCCACTCTGCTACAGTTGCCGCGGTG
GGGGAAAAGTTCTTGGCCCGGGATATAACCTTCCAAAACACAGCAGGAGCCTCGAAGCATCAAGCCGTGGCACTTCGCGTGGGCTCTGAT
TTGTCCGCATTTTATAGATGTGACATGTTGGCTTATCAGGACACCCTCTACGTCCACTCTAATCGTCAATTCTTTGTACAATGTTTAGTC
GCTGGTACCGTTGATTTTATATTCGGGAATGGTGCTGCTGTTTTTCAAGACTGTGATATTCACGCCAGGCGTCCTGGTTCGGGCCAGAAG
AACATGGTTACTGCTCAAGGAAGAACTGACCCTAACCAGAATACTGGTATTGTTATCCAGAAATGTAGAATTGGTGCAACGTCTGATTTG
AGACCGGTGCAGAAGAGTTTCCCTACATATCTAGGAAGGCCGTGGAAAGAATATTCGAGGACAGTGATCATGCAATCGTCGATTACTGAT
GTGATCCAGCCTGCTGGATGGCATGAATGGAATGGGAATTTTGCATTGGATACTCTGTTTTATGGGGAGTATGCAAATACAGGGGCAGGA
GCACCGACGTCAGGAAGAGTTAAATGGAAAGGGCACAAGGTAATTACAAGTTCAACTGAGGCCCAAGCTTATACTCCTGGCAGGTTCATT
GCTGGAGGTAGTTGGTTGAGCTCCACAGGCTTCCCTTTTTCTCTTGGTCTTTAAAACTAAAAATAAACACGAGCGAGTTTCAATTATTTG
GAGACCTAAGTGTGCAGGGCCTTGGCATTTAAATAACAAGATCCTTTCACGAATTTCCCTGTCTTGTCAACTTCTATTCGTGCTGAGGAA
TTTTAAGTAATGTACATGTTAATATTAACTATTGTGTGCAATATTTATCTCATGCG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pmeu1	pectin methylesterase pmeu1	pectin methylesterase

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LeMiToFr02	fruit	18697	4
Solanum lycopersicum	LeMiToLf01	leaf	30679	8
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	Sl_RootGC02	root Developing giant cell	141	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	7
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOS	suspension cultures	8026	9
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (85)

Alignment image suppressed for unigene with 85 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U313725	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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