Sol Genomics Network

Unigene SGN-U578637

Unigene Basic Information

Unigene ID:	SGN-U578637
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2829 bp

>SGN-U578637 Tomato 200607 #2 (198 members)
AATTTCGTGTTTCTGAAGCCGCCGCCTAACAATCCCAAAGAGAATCAGCGATGGGTCGAAGACCTGCAAGGTGTTACCGCCAGATTAAGA
ACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTG
ATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACA
AGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGT
CATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGG
TTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGACAAA
AGATTATTGTCAGCAGAAAGTGGGGGTTCACTAAGTTCAGCCGTACCGATTATCTGAAATACAAATCCGAGAATCGTATTGTCCCAGACG
GTGTGAACGCCAAGCTTCTTGGCTGCCATGGACGACTTGCTGCACGTCAACCTGGAAGAGCTTTTCTAGAAGCTGCAAATTGAAGTTGCA
GAATTTACAAATCTGTACCTTTAGCTTTCTACTTCCGCTGAATGAAATTTTGTGTCTTGATCTTCTATCTAGTTCTGAACCATTATATAA
GTTGTTACCGCTCTGAACGTTTACCTTTTCAGAGTATAACGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCA
CTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAA
AAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGATTTCATTTGCTGCTAAAGA
GATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAA
TCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATC
CACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTG
TTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGA
GTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACC
AACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGT
TATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTA
TAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGC
AAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTT
TGACAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGG
TGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGG
CATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGA
TGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTC
AATTGCTGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCC
GATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGC
TCTCTTCCTGAAGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGC
CACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATG
AGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTT
GCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAA
TATTGCCATCTTACATATGGAATTTATTACCCCTATCCT

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
aci29	60S ribosomal protein L10	60S ribosomal protein L10 (ACI29)
lapn	leucine aminopeptidase 1
LAPA2	leucine aminopeptidase A	acidic leucine aminopeptidase

Genomic locations (0)

None

Library representation (38)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	9
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	LeCfAFLP	Seedling	190	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	9
Solanum lycopersicum	LeMiToLf01	leaf	30679	35
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	7
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	10
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	6
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	28
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	7
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	6
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	7
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (198)

Alignment image suppressed for unigene with 198 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 5 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312375	Tomato 200607 #1
SGN-U333508	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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