Sol Genomics Network

Unigene SGN-U268661

Unigene Basic Information

Unigene ID:	SGN-U268661
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268661
mRNA sequence:	Length: 1678 bp

>SGN-U268661 Solanum tuberosum #4 (50 members)
ATTATTTATTCCTTACAGGAAAAACGAAACCCTAAAAATCTTTCTTCTACCGATCTGCTTCTCCTCTTTTCAGTTTATCTGGTTCTGCAA
GGCGGCGAGTTTTCTGGTAGCTATCTCTTCCGACAGCAGCAATCATGGCGTCGAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGG
ACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGC
TCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAGAAATGATGGAGAGGA
GAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGT
TGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCA
AATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCA
GTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCG
ACTCAAAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACA
ATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAAATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGG
CTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATC
CCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAGCTAATATTGA
ATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTA
TCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGAT
GGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATG
TGTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTCGAACATGCACAAACACAAC
TTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTT
GTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAATTATACATCGTTTCGTATTACTATTTCTTTGTTATC
ATATGTTGTCTCCATTGGAAGTGGAACGCCTCTGCATTTTCATAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	4
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	6
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	8
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	5
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	6
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	4

mRNA member sequences (50)

Alignment image suppressed for unigene with 50 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2169	PCI TPR	8
2	24373	PCI TPR	8
5	58798	PCI TPR	7
1.1	101735	Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) SWIRM	42
2	120781	Proteasome component region PCI Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488)	8
5	131438	Proteasome component region PCI Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488)	7

Preceding Unigenes (1)

Unigene	Build
SGN-U243653	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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