Sol Genomics Network

Unigene SGN-U268054

Unigene Basic Information

Unigene ID:	SGN-U268054
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268054
mRNA sequence:	Length: 2147 bp

>SGN-U268054 Solanum tuberosum #4 (71 members)
ATAAAACGGAACTCTCCATTTTTCATTTTCTCCCTCTGCTTCCTCTTATCCCTCTCTGTAACACTTTCATTTGTCTGCTTTCCACTTCAC
AATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCTCCTCCTCAACCAAATCCCTAAAACCTTC
TCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAA
CTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTT
TAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAGTACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAA
AGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATC
TGACATAGTTGTTAAGATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCT
TGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGCTGATAATTATGAGAAAGTATT
TTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAA
CATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTTAATGGTGCTGGAAT
TAATTCAAGTTTTGCAGTTCACCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTAC
TTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTC
ACTTTTCAGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAGTGCATAACAGGAGTCATTTCAAAGAC
CATATCAACAAAGGGCATGTTGGCTGTGTACAACTCATTGACTGAAGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTA
CCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCGCCGCTTTTA
TGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAACCCGGCC
AGCTGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGATTGAGGTTCTGAGGAAGAAAGG
TCACTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCAT
GGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAGCAAGCACTTGTAGC
TGTGGATAATAACGCCCCTATCAATCAAGATCTCATCAGCAACTTCCTTGCAGATCCTGTGCATGGAGCTATTAAAGTCTGTGCTGAACT
GAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGGCAATTAAGGGCTTTACGGGTG
GGAATTTTGTGGAATTGTGAGGTTTAGATTTTATTTTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAA
TCTTAGCCTTTTTCGTTGCTTAGTTACGCCGGTACTAGCACTTTCTTTATGTAACCTTTTTCTGAATAACAGATTCGAAATTTGGGAACC
CCTTTAGCAACTATAAAATGTAGGTCATGTGGCAGTAGCATGTTTCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	10
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	5
Solanum tuberosum	SWST	Stolon	5942	7
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	13
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	8

mRNA member sequences (71)

Alignment image suppressed for unigene with 71 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	132	Transketolase_CR Transketolase_C	101
2	22789	P5CR AcH_isomrdctse	19
5	56994	P5CR AcH_isomrdctse	18
1.1	101821	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	35
2	118737	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	33
5	129184	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	33

Preceding Unigenes (1)

Unigene	Build
SGN-U243412	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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