Sol Genomics Network

Unigene SGN-U268162

Unigene Basic Information

Unigene ID:	SGN-U268162
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268162
mRNA sequence:	Length: 2656 bp

>SGN-U268162 Solanum tuberosum #4 (54 members)
GTCTTCTTTTAGTAATGGCACCTGAAAATCTGCCTTGTTATGTTTAACTAAATTATTGTTAGCTGCTATGTCAGCTCCTGGTTCCATATG
CTTTGTCGAAAAGCTCATTTGATTTAGAAAGTTCGCATAAAGGGTAACGTATCCTCTTAACTACATCATGTCTACCACGAACTTCTTCCA
TGAGGCTTGCCATTCATTAGTTCTTGATTTTGGTGTCTGTACACATTTTGTTTTCGATCTTTCGTGAATCTCATGTTCATGTAGACGTAG
AACTCTTTCCATTGCTTGGGGGAAAAACACTGCGCCCCAACTGCAAGGCAGCTGATGAAGATATGATGTGTTAGGCTGAATGTATTTGAA
CAACTCAATTGCATTTCATTTATGCCTCTTCCGGCTGCCACCATCTTCCGCCAATGGAGATGTCGCCAGCACCACTACACCTCTTCCTCC
TGCTACTGCTCCTGTTCCTGCTCTGAAGAGTGCCCTTAAAACATACTAAACCACCTGCAGAATCACAATCCAAAAATTTTAATGTGATTA
TTACAAGCTCTGGTTAAAGAAGGAGGCTGCCAAGGATCCAATCAAGCTTAGAGGCCCAACAACTGCTTTCTTTCTTCATTTTCATGTCAA
CCGTTTTCAATTTACAGCAAAGATGAATGACGTTGCTCAACTTCTTACCATGAAGATAATAACAATCTATAGCAACATCAGCAAACTGCT
GCAACAATGACAGTATACGCAGTGCTTCAATCAACTGGCAACTCAGCGCTAATGTACATGCTGAAGTATCAATACTGCAGCAGCTGCCAC
CTGTTCTTTCTTTCTTCCTGTACATATGTCAATATGCAATGCTTCTTTGGACTTCATCCATCTGCCAACCTAACAAAGATACTACTATTT
GGTTAACTATCTTTCCTACAAACATGGTACTAAGAGTGAACATCAACCAAATAGAACCACCAACACGAGATTGGATTTGCAAAGTTCAAA
TTGTCGAAATAGCACGCCCAAGAGAAAGCCTTGACAAGAAATGTACATTCCAAAATTTAATTTTGGAAGATGAAGAGGAATGCCAAATTA
AGGCTGTTATGTACGCTGACGAAATTGAGCAGTATGCAGATAAGCTTAAACTCCTCCATACCTACCTCATCTCTACTGCAAGAGTGAAAG
TCTCGCCTACTTCATACGGCAAGCCAATACATAAATTTTACTGGATTCTTGACAAAGAAACAGTAATTGAACAAATCAAACCATCTCACG
AAGTTGAAAAAGCACTTCCACCGCCAACGAAGCTGAATATCACAACCTTTGACCACATTCCTCATCTGATGGTTGATTCTGCTGCTGAAA
TAGATATACTAGCAATTGTTCTTCGTTGTGGTCCTCAAAAAAACGCCGGTCGCAGTCATCATAGGTGTCGAGAAATTACCCTTTGTGACA
ATCAGAAAAGTCAGTTTCTGTTCACTCTATGGGAGGATTTCGGCGAAATAGAAGGACATGAAATTGCCTCTAAAATGGCAACAGAACCAG
ATCTGCTTGTCATCCTCGCAAGAAGTATAGGAATCTCTACTTATCAAGGGTTGTCACTGCAAACCAGATACAATTCCACACTACGTGTGA
ATCCCAATTACCCACAGGCAGTGGCACTCATCAACTGGGCAAAAGAGAACAAAACAATGTTGTTAGGTTGTCCATCAGAGAAAACCTCAA
CAAGCTCATCTACCGCTCCCATGATACTCACTACTGGTGGCCAACAACTTCTCTCTATTGCAGATATCTCATCAGCACCTTCTATGGGAA
TGTTCTATGTTGAAGCAGAGATGGCCATATTAGATGATTTCCAAGACTTTTGTGTGCTTGAATGCTCAGGATGCAAACAGAAGAAGCGGA
CAAAGGATAGAAAGGATTTTGACTGTCTAAAATGCAATCGGAAAACAGCCTTAGTGCCTCGCTGTAGCTTCCAAATTGATCTTATTGACA
ACACTGCTACAACCACATCATCTATCTCTGCTGATTTAGGAGAAAAAATACTCTCCATGACAGCAGAAGACATATTTGACATAACTTGCA
CTAAGCGACAATCATTGTCTCTTACTCATGTCCATGAGATGTTGTCCAACAAAGTATTCACAATTCAGCTGAGGAAGTCATCTTGGGGCA
GCTCAAATACCACGCATACAACTTTGTCCATTCTTTCCTACACGGAAAAACAACATGCTCCACAGACCACCACTGATAGGACTTCTAAAA
AGATAAAACCTTTGGAAATAACTGAGGTAGAAGTGATAGCAACAACTACTGCAGCTGCTTCTTCAAATGCACCGCCCAAATTTGAACCAC
CCACACCAATCAAAAAGGTGTAAAAGGAACTACCTCGCACCATTTTGTGACTTTTGCTTATGATAGGGACAATATAATGAACAACTCTCC
CTATGCTGTGGTTTATTTCATGAGGAAGATTAACTATGGACAAGCAAACTGCAGTGTCTTCTAAATATGATACTGCAACATGTATATTGT
TTTTGTTATGTTCCATTAGTTAGTATGTGCGAATAGTTCAACTCGACATCATACTGATGTGTATTGTACATATTCTGAATATTTCTAATA
GTACATATTATAATATATGATAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	3
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	20
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (54)

Alignment image suppressed for unigene with 54 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	217	Mago_nashi	69
2	22225		43
5	56641		28
1.1	101401	Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676)	283
2	118596	Mago nashi protein - Cellular Component: nucleus (GO:0005634) - Biological Process: sex determination (GO:0007530)	45
5	129270		28

Preceding Unigenes (3)

Unigene	Build
SGN-U243125	Solanum tuberosum #3
SGN-U243132	Solanum tuberosum #3
SGN-U243156	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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