Sol Genomics Network

Unigene SGN-U268473

Unigene Basic Information

Unigene ID:	SGN-U268473
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268473
mRNA sequence:	Length: 1678 bp

>SGN-U268473 Solanum tuberosum #4 (35 members)
GAGAGAGAGAGAGAGAGAGGGGGGGGGGAAATCCAGCGCACTGAAAAAAAGGTGAATTTTGCGAGTACAAAACCTAGCGGCGGTGTGATT
GCCACCCACAAGAGCAACACGGGTAGATTTGATTCTACTCCAAAGGAGCAACAATTGTCTAATTCTAGCAACCTCCATGTTTTTGACTGT
TTGAAGCATTCAATAACAAGGTCAAGAAAACCCCTATGGATAGAATTGAGTTTCTAGGTACACCCAGAAATTAAATTAGATGATCTAGAA
CTAAAAACCATAACAAAAAAACAGAGCATACTCTGTTTTCCTCTGTTTTTTCTACTTAAAAATCTCTTTCTCCTCATGACTAAAGAAGTC
GAGGCCGTTCACGAGCAGGCGGCGGAGTATTCCGCAAAGGATTACACTGATCCTCCGCCTGCTCCTCTGATCGATTTCGAGGAATTGACC
AAATGGTCTCTATACAGAGCAGTAATAGCGGAGTTTATTGCTACTCTGTTATTTCTTTATATCACTGTTCTTACTGTAATTGGATACAAA
CATCAAGCCGATGTTGACGCCGGAGGCGATGTCTGCGGTGGCGTTGGTCTTCTTGGTATTGCTTGGGCTTTTGGTGGCATGATTTTCGTT
CTTGTTTACTGTACTGCTGGTATTTCTGGTGGACACATCAACCCTGCTGTGACATTTGGGTTATTTTTGGCAAGGAAAGTGTCATTGATT
AGGGCAGTATTGTACATGGTAGCACAATGTTTGGGTGCAATTTGTGGTGTAGGTTTTGTGAAGGCATTCCAAAGTGCATACTACAATAGA
TATGGTGGTGGTGTTAATGTTATGGCACCAGGACACACCAAGGGTGTTGGTTTGGCTGCTGAAATTATTGGTACTTTTGTTTTGGTCTAT
GTTGTCTTCTCTGCCACCGACCCCAAAAGAAGTGCCAGAGACTCTCATGTTCCTGTCTTGGCCCCACTTCCCATTGGATTCGCCGTATTC
ATGGTTCACCTTGCCACTATTCCGATCACCGGTACCGGAATCAACCCGGCGAGGAGTTTCGGGGCGGCCGTGATTTTCAACGGCGACAAG
GCGTGGGACGAACACTGGATTTTCTGGGTCGGGCCATTCATCGGAGCTTTCATCGCCGCTGTCTACCACCAATACATTCTCCGAGCTGGA
GCAATTAAAGCTCTTGGTTCATTCAGAAGCAATGCTTGATAAAAGATGGAATAATTTGATGGATTTGAGAAATTTGTAGATAAAATGTTT
GTTATGTCACATCTATCGCGAAATGTTATGTGCATCGAGCTGACATCCTTACGTTCTTTAAAAAGTTTGTTATTCCAAATGGGGAAAAAG
GATGGGACTATTCTATCGTTTTGATTTATTTTTTGTTTTGTTTGCTTTGAATGTATTTAAGTTAAATCTATTTGTAATGTTTGGTTTTAT
CTAGTTGTCCCTTTGTTATCTTTTTTTTTTTTTGTATTTCTTGTTGATTTCATGTACATTATATTAATAGTGTATATGTTGGGTTCAATT
TTTTATTTTTTCATTTACTTTGAAAATTATCAATCTTGTCAACGTAAATAGTATTTGAGGTGAGGATTTATCGAAAAATATCTTAATATT
TTTCAAATAGAAATAAAAATTGCATATATCCCCTTTTTTGGGTTGAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
pip2	plasma membrane intrinsic protein PIP2
DQ235182	DQ235182 major intrinsic protein 2
mip2	major intrinsic protein 2

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	7
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	62	MIP	192
2	22002	MIP	174
5	56307	MIP	92
1.1	101425	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	199
2	118438	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	168
5	128978	Aquaporin - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	87

Preceding Unigenes (1)

Unigene	Build
SGN-U243484	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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