Sol Genomics Network

Unigene SGN-U268694

Unigene Basic Information

Unigene ID:	SGN-U268694
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268694
mRNA sequence:	Length: 1970 bp

>SGN-U268694 Solanum tuberosum #4 (79 members)
CACATATTGAAAAGCTAGGTTTTAGCTCTAACGCCTCCTCTTCTTTGTGGAGTGTATACTCCAAACCGGCCGAGACGACTGAGGTATAAA
CGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAA
GCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAA
TACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCG
TCGTTGGTTCGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAA
TGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGCAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTT
CGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTC
TCATGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTT
TGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAGGTTCTTGATGCCAGAGA
CCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGTGTGA
TTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATC
CTTTGGAAAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTA
TCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTG
GCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTT
GAAGGGCGTGGTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGAAAG
AGCTTATAAGATAAAGAATTGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTTAACAGGCAAACTTCTGAAGGGAGGCGAACC
TGACTATAAGACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAAAATTCCTTTCTTTGTTCCACCTCCAAAGCTGGATGATGA
GCAAAATGAACTTGTCGCTGAGGCAGACACAGCCGTGGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGATGTCGTTTCATC
ACAACAACTGAAGGAAGTTCCTGTTCAAGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTGAAATGGACGGATCATCTTTTC
TATATCATTCTTATATCTTTAAGTTTAGGTCCATTGCTTTCCCCAGTTTTTCTAGTCCTAGTAGAGATTGATATGCGGGTCGAAAATATA
GATATCTCGTATTTTGTTTTAATGTTTATTTCGAATTTTGTCTTATTTACGGAATTGAATTGGTATGAGCTTAAATGGAAATGATTCATA
ATGTTTATCTCAACTTGTTTAAGATTGAAGCTTTAAAAAAAAAAACAACAAAAAAAAGAAAAAAAAAAAAAAAAAAAACT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	4
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	9
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	13
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	11
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	12
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	4

mRNA member sequences (79)

Alignment image suppressed for unigene with 79 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	184	MMR_HSR1	78
2	23235	GTP1_OBG Small_GTP MMR_HSR1 GTP-bindding_dom	14
5	58813	GTP1_OBG Small_GTP MMR_HSR1 GTP-bindding_dom	7
1.1	101549	GTP1/OBG - Molecular Function: GTP binding (GO:0005525) GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	77
2	119478	GTP-binding - Molecular Function: GTP binding (GO:0005525) GTP1/OBG - Molecular Function: GTP binding (GO:0005525) GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	15
5	131716	GTP-binding - Molecular Function: GTP binding (GO:0005525) GTP1/OBG - Molecular Function: GTP binding (GO:0005525) NGP1 N-terminal GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U243536	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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