Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Unigene SGN-U268737

Unigene Basic Information

Unigene ID:	SGN-U268737
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268737
mRNA sequence:	Length: 1001 bp

>SGN-U268737 Solanum tuberosum #4 (52 members)
CTTCCAAACTACTCTGCTATTGGCTCAAAAATATCCTTTTCCACCTCTGCAATCTCCGTCTCCTTCAATTTCAACTAAAGCAAATCCACC
TCTCTAACCAGTTTCATCACTTTCAGGTCAGGGTTTGCAGTTGAAGGTACAGGGGCTAATTGATGGCGTCGAAGAGGATATTGAAGGAGC
TCAAGGATCTGCAGAAGGATCCTCCCACATCATGCAGTGCTGGTCCAGTGGCAGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGC
CTACAGATAGCCCTTATGCTGGAGGTGTATTTTTGGTTTCAATTCATTTCCCTCCAGATTATCCTTTTAAGCCTCCAAAGGTTGCCTTCA
GAACTAAGGTTTTCCATCCCAACATCAATAGCAATGGAAGTATTTGTCTGGATATTCTTAAGGAGCAGTGGAGTCCAGCATTAACCATAT
CCAAGGTCCTGCTGTCCATCTGCTCTCTGTTGACAGACCCAAACCCAGATGATCCTCTTGTACCTGAAATTGCTCACATGTACAAGACTG
ACAGGGCCAAATACGAAACCACTGCCCGTAGCTGGACTCAGAAATACGCAATGGGATGATGCACAAAATTGTCTCCAGGCATGTCTGGGA
CTTTTGTAACAGCAATGTCTTATTGTGCTTGGGGTGAATGAATAAATTCCGTGAAAGAACTTGGTTACTTCTTTAATCTCCCTTCATGTG
GGTTGTCAAGGGAACGGTGTTTTCAATTTGTGAATATCTATTTGATGACTAGTAAGGGAGAAACTGCAATGTACGTAATTCTACTTTGTT
TGCCAGTTTGACATGCGCCTTTCCCCTAATTTGTCTGACAAATATGGTGAGATCTTTGAATTTTAGGGTTGATTCACAATTATCAACCTG
AATTCTCATCTGGTACCATTGTTGAAAATGGAAATGGAGATAACAAGCAATTTTATTATTATGAGAATATGTTATGAGTGTTAAAAAAAA
AAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
DQ294262	ubiquitin-conjugating enzyme E2
DQ284472	DQ284472 ubiquitin-conjugating	ubiquitin-conjugating

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	5
Solanum tuberosum	ACDC	Sprouting Tubers	5177	5
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	3
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STOL	Stolon	6462	10
Solanum tuberosum	SWST	Stolon	5942	4
Solanum tuberosum	TBSK	Tuber Skin	4812	4
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (52)

Alignment image suppressed for unigene with 52 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	25	UBQ_conjugat	316
2	21990	UBQ_conjugat	232
5	56280	UBQ_conjugat	146
1.1	101402	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	283
2	118431	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	197
5	128961	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	109

Preceding Unigenes (2)

Unigene	Build
SGN-U243769	Solanum tuberosum #3
SGN-U243771	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: