Sol Genomics Network

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Unigene SGN-U269417

Unigene Basic Information

Unigene ID:	SGN-U269417
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269417
mRNA sequence:	Length: 842 bp

>SGN-U269417 Solanum tuberosum #4 (35 members)
GAAATAGGCAAAGTCCCTCAGTCCCAGTAGTCCCAAATTTCTCCTTCTCCTTATTCCTCTCCACCGGCGAACCGTCAAAGATCAAAACGA
TGTCGGACGAAGAGCACCACTTCGAATCCAAGGCCGATGCCGGAGCTTCAAAGACGTACCCTCAACAAGCTGGTACTATTCGTAAGAGTG
GTCACATCGTCATCAAAAATCGTCCTTGCAAGGTGGTTGAAGTTTCGACTTCCAAGACAGGCAAGCACGGTCATGCTAAATGTCACTTTG
TGGCAATTGACATTTTCACTGGAAAGAAGCTTGAGGATATTGTTCCCTCTTCTCACAATTGTGATGTTCCTCATGTGAATAGGACTGATT
ATCAGCTTATTGATATCTCTGAGGATGGCTTTGTGAGTCTGTTGACTGAAAATGGTAACACCAAGGATGACTTGAGGCTCCCAACTGATG
ATACTCTTCTGGCTCAGGTCAAAGATGGTTTTGCCGAGGGGAAGGACCTGGTTCTGTCAGTGATGTCTGCCATGGGAGAGGAGCAGATTT
GTGGTATCAAGGATATTGGCCCTAAGTAGCTGCAGATGGTATTGGTGTATGTTTACAGAGATTCTAAAAAAGATGTATTATGTAGAAGAA
TCAAAACTTCTTTACTTTCTCTTGCAGTTGCAGTTGTTCTAGATAACTGCTATTCAACTATATGTGTTGTGATTGGATTCTTGTACTCAC
TACGGTATTTCCTTTACTCTGATATTGCTACCTTTCTAATATCGTCTGGACATAAAAGCTTGCTTCTGTATCTTAAAGCTATTTCGTCAT
AAATTGTTTGAAGTGCTTCATCATTGAGAGTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
eIF5A5	eukaryotic initiation factor 5A5

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	7
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	124	RuBisCO_small	107
2	22316	KOW EIF5A_hypusine	35
5	56536	KOW EIF5A_hypusine	33
1.1	101744	Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Eukaryotic initiation factor 5A hypusine (eIF-5A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Translation protein SH3-like KOW	41
2	118632	KOW Translation protein SH3-like Eukaryotic initiation factor 5A hypusine (eIF-5A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676)	41
5	129106	KOW Translation protein SH3-like Eukaryotic initiation factor 5A hypusine (eIF-5A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676)	40

Preceding Unigenes (2)

Unigene	Build
SGN-U244132	Solanum tuberosum #3
SGN-U259394	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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