Sol Genomics Network

Unigene SGN-U269916

Unigene Basic Information

Unigene ID:	SGN-U269916
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269916
mRNA sequence:	Length: 1995 bp

>SGN-U269916 Solanum tuberosum #4 (27 members)
CCAGAACGTGCTTCTTGATTTTCTTGAGCTTCGTTCCCATTTCCCTCTTTCCCTGTATAGGAACCACAACAAACCCTAGCCTAATTCATA
AGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTCACCACATCCCATTCACTCCGACGTCTTTATTC
GGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCACCAGATGCAATGATCTACGATCGATTGGCTGA
AGACGTTAAACAAAAGATCAAAAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCACCACACCCAACTTTAGCCGACCACAC
ATCAATCCTCAGCTTCCCTTCTACGCGCGTGACCACACTACCATCAGGCCTGCGCGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGC
CACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAA
GGGTACCGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCCTATACTTCCAGGGAGCAAAC
AGCATACTATGCTAAAGTTTTGGATAATGATGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTTGAAGAGAA
AAAGATTGAACGTGAACGTGATGTCATCCTTAGGGAGATGGAGGAGGTTGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTC
AACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCACCTGAAGGACTA
CATATCAACACATTATACCGCTCCCAGAATGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTGAAGAAACA
ATTTACTAAACTTTCAACCAATCCGACTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTTAGGGTAAT
TGATGATGACATTCCGTTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCATGGACTGATCCAGATGCCATTCCGCTGATGGTAATGCA
ATCCATGCTGGGAACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGCTCCGATCTGGCACAAAGTGTTGCCATTAATGAACTAGC
TGAGAGCATGATGTCTTTTAACACCAATTATAAGGATACTGGTCTGTTCGGCGTGTATGCTGTTGCAAAGCCTGATTGTTTGAGTGATTT
GTCCTACTGCATTATGCGTGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCATGCTTGCAACCAGTTGAAGTCTTC
TCTCATGCTTCACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGCTACTCACATATGGCAGAAGGATTCCAGTCACAGA
GCTGTTTGCAAGGGTTGATGCCGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGATGTTGCTATATCCGC
GTTGGGGCCTATCCAGACTCTACCTGATTATAATTGGTTCAGGCGTAGAACCTACATGCTCCGTTATTAGACGATTTTTTTTTTGGAGTT
GTAATGCATCACACAATTACACACCTCGCTTGACCATTCCGAACTTGGACATATAGGTCTTACTTTTCTAATTCCTCCTCTTGCCTACCT
TCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAAATAAGCGGCCTATATTTAATAATTTGGTTATTGACGTTTGTTTTCATATTC
TTTTAAAAAATTGTACTCGTAGATGCAAATTAAACATTTAGGTTTGTTATGGTTTACCCTGTACTTTTTATATGAAAATCAAGAATGCTA
TGGATCTTCATTAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
DQ284488	mitochondrial processing peptidase	peptidase
X80235	beta I2 subunit; mitochondrial processing peptidase

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	7
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	5
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (27)

Alignment image suppressed for unigene with 27 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	763	Peptidase_M16 Peptidase_M16_C	25
2	23266	Peptidase_M16 Peptidase_M16_C	14
5	57334	Peptidase_M16 Peptidase_M16_C	14
1.1	101620	Peptidase M16 C-terminal	57
2	119716	Peptidase M16 zinc-binding site - Molecular Function: metalloendopeptidase activity (GO:0004222) - Biological Process: proteolysis (GO:0006508) Peptidase M16 N-terminal Peptidase M16 C-terminal	13
5	130164	Peptidase M16 zinc-binding site - Molecular Function: metalloendopeptidase activity (GO:0004222) - Biological Process: proteolysis (GO:0006508) Peptidase M16 N-terminal Peptidase M16 C-terminal	12

Preceding Unigenes (2)

Unigene	Build
SGN-U245018	Solanum tuberosum #3
SGN-U267750	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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