Sol Genomics Network

Unigene SGN-U270020

Unigene Basic Information

Unigene ID:	SGN-U270020
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270020
mRNA sequence:	Length: 1489 bp

>SGN-U270020 Solanum tuberosum #4 (23 members)
CTTAACGCTAACATGCGCTGGGCTCTCTTTTCCACCGCCGCTGCCACCGCCACCGCCACCGTCGATTCGTCGATCTAGGGTTTCTCTCTT
GGTGGGTTTCGGAAAATTTCTGATCCAATTTTATAAGAACAGAGAAATCTCTTAGTTCTTGAAAAATGGGTCTTTTAAGTGCTTTTGCAG
CTGGGTTTGTGGTTTTATTGATGGTCTTTGAAGGGATGGCGTCGCCGGAGACTGTTAATGTGTCGGTTCGTTCAGTTTGCCCCTTGAAAT
CTGTTAAAGATTCGGTTTTTATGGGGTTTCAAGATTTGACTTGTCCATTAGATGGGATCCAATCTTCTTATGTGGCTGAAGTTATTCAGG
GAGATGAGCTGTCATTGCAGAGGGCACTAAATATGATTCACCGAAATACACATGATTATGTTGCTTTGCTTTTCTATGCATCCTGGTGTC
CTTTCTCTAGAAGTTTTAGGCCAAAATTTTCCATCATGTCTTCTTTGTATCCTTCAATTCCCCATTTCGCAATTGAAGAGTCAGCTGTTA
AGCCAAGCACTCTCTCAAAGTATGGAGTTCACGGGTTTCCTACTCTCTTCCTTTTAAACTCAACAATGCGCATGCGGTATCATGGCTCTC
GCTCCCTTGATTCAGTGATTGAATTCTATGGTGGCACTACTGGTTTTCATAGTGCTTCGGTGGATGCCACTTCTCTTGGCAAAATGGGAT
GCTCCTCAAATCTTTTGAAACTGCATGGAAGTGACCAGGAAAACTGTCCATTCTCCTGGGCCAGATCTCCTGAAAACCTTTTTCAGCAAG
AAACATATTTGGCCTTGGCCACTGCATTTGTGCTAATGAAAGTACTTTATATGATATTTCCAGCTTTACGTAAGATTGCTCAAATTGGCT
TGGGAGGTTGCATTATACAAATAAGAATAAGAAGCTTGTGGGAGCTTCCTCTGCTATATCTGAACCGAGCTGTACAATTATGTAATTCAC
TGAAGGAGCCATGCAAAAGAAGCAACTTGCAGGAAGGAGCTATGAACGCCAAGGCATGGGCTTCTAAGTCTTTAGCGTCTGTCTCATTTG
GAGAGTCTAGCGCTAGCCGGGTGGAACCAGTAAGTTCAACTCACTAATTGCTTTGATGGCCATATCTAAAATCATAGTGCTCTTTTATAA
TTTGTTTTGGCCACCATAATTGGTGCGGGTTTTATCTGATTGGCACGGCGCTATGCAATATCAAGCTTTTGAAACGATCTGCTTCAATTT
GATGTAATGTAGATTAGAATTTTTTTCTCACCGTCAGAGAAATAATGTACCACATTGTATATAGCTTTAACTAATAGGCAGAGCTTTTGA
ATTCAGATCCGTGTTTATTTAATTAAATCAAGACACTGTCTAGTTCCTTTTGTATGCTAAGTTGTCTTGAATTAGATCCTTTGTGAAACA
AAATTCAGGTAACTCATCGAAACTCAGTACACATGTTTTTGCTTTCTAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	39	Thiored Thioredox_dom2	262
2	23985	Thiored Thioredox_dom2	10
5	59665	Thiored Thioredox_dom2 Disulph_isom	6
1.1	102662	Thioredoxin fold Thioredoxin-like fold Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118)	11
2	119952	Thioredoxin fold Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin-like fold	11
5	131688	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	6

Preceding Unigenes (1)

Unigene	Build
SGN-U244838	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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