Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579041, SGN-U579107, and SGN-U593659 in the current build, Tomato 200607 #2

Unigene SGN-U312357

Unigene Basic Information

Unigene ID:	SGN-U312357
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312357
mRNA sequence:	Length: 2451 bp

>SGN-U312357 Tomato 200607 #1 (388 members)
GATTGGCGGCCAATCGGCCGAATTCCCATGGGGATCCGATCTCTTGCATTCGAGTCCCTTTGTGTTCCATTTCGCCTTACAGTTTTCTTC
AGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACAC
TTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGATGCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGA
CAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTAT
TGGTATGACAAAGGCTGATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGC
TGATGTTAGCATGATTGGTCAATTCGGTGTAGGTTTCTACTCTGCTTACTTGGTAGCTGAGAAGGTTGTTGTGACCACAAAGCACAATGA
TGATGAGCAATATGTCTGGGAGTCTCAAGCCGGTGGCTCTTTCACTGTTACCAGGGATACATCTGGTGAGAACCTTGGTAGGGGTACCAA
GATGGTCCTTTATCTCAAGGAGGATCAGCTTGAATACCTTGAAGAACGTAGGCTCAAGGACCTGATTAAGAAGCACTCTGAGTTCATTAG
CTATCCTATTTCTCTGTGGGTTGAGAAGACCATAGAGAAGGAAATTTCTGATGATGAGGAGGAAGAGGAGAAGAAAGATGAGGAGGGAAA
GGTAGAGGAGGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTGGTCACTGGTGAACAA
GCAGAAGCCTATTTGGATGAGAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGA
GCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTT
TGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTT
GAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTAT
TCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTC
TAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGA
TGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGT
TGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCA
GCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGA
AGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGT
TGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTC
CAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGC
AGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAA
CACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATT
GGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTAC
TACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTT
AGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Hsp90-2	molecular chaperone Hsp90-2

Genomic locations (0)

None

Library representation (38)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	29
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	10
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	7
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	11
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	38
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	6
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	23
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	15
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	28
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	13
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	16
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	9
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	7
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	23
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	11
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	22
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	23
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	9
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	25
Solanum lycopersicum	cTOS	suspension cultures	8026	10
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSC	seed	2256	8
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (388)

Alignment image suppressed for unigene with 388 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101540	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	81
2	118502	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	77
5	128990	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	76

Preceding Unigenes (3)

Unigene	Build
SGN-U212640	Lycopersicon Combined #3
SGN-U212641	Lycopersicon Combined #3
SGN-U212642	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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