Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577715 in the current build, Tomato 200607 #2

Unigene SGN-U314806

Unigene Basic Information

Unigene ID:	SGN-U314806
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314806
mRNA sequence:	Length: 823 bp

>SGN-U314806 Tomato 200607 #1 (133 members)
CGGCCGATTATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGCGGAAGT
TGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACAT
GTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAA
GAAGCTGCGCAAGGCGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGA
GATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGA
GTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAT
CCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGT
TTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGG
TTACTTTGTGTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNCCCGGGGGGGGGGGGCCGG
CCCCCCTCCCCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (27)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	12
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	6
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	22
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	8
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	9
Solanum lycopersicum	cTOS	suspension cultures	8026	10
Solanum lycopersicum	cTSB	seed	1880	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	6

mRNA member sequences (133)

Alignment image suppressed for unigene with 133 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101822	Ribosomal protein S19/S15 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	34
2	118813	Ribosomal protein S19/S15 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129251	Ribosomal protein S19/S15 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28

Preceding Unigenes (3)

Unigene	Build
SGN-U213045	Lycopersicon Combined #3
SGN-U213046	Lycopersicon Combined #3
SGN-U232285	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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