Sol Genomics Network

Unigene SGN-U268136

Unigene Basic Information

Unigene ID:	SGN-U268136
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268136
mRNA sequence:	Length: 1109 bp

>SGN-U268136 Solanum tuberosum #4 (83 members)
AAAGAGCCCAACTTCTAACCTGCCTTAAATCTTTGACAAACCCTTTCTCCTCTATACCCATCGAACTCTTCACTGCCTCTTACTTGTATC
TGCTAGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAGTTTGTAGCGGATGG
AGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCG
AACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTGGTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAA
GCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACT
GCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAGGGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGA
GGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAA
AGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAGGGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAA
GGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAAGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTAT
AATAGCTGCTCCCGCGATTGAGGTTCTTCCCGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGTTCTTGAGAACTACTGCACTAGCT
GGCTTGTGTTTTTTATTTATTTTCCTTTTTCACTGCTGAATACTAGATTTTACATAGTGAACCATTTTGCTCTAGTTTCTGTTATGTAAG
ATACTGACTGGTAAGCATTTTTGTTAATCTTCCATCTCCCTAATAAAATGTTACTTTGGAATGAAATTGTTTTTGATGTTTCACTTTATT
TAATAAAAAACAAAAAAGAAAAACAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ294256	40S ribosomal protein

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	4
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	10
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	8
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	8
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	14
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	5
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	10

mRNA member sequences (83)

Alignment image suppressed for unigene with 83 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	935	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20
2	22748	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20
5	56890	S3_euk_arch Ribosomal_S3_C S3_bact KH_TYPE_2 KH	20
1.1	102210	KH prokaryotic type Ribosomal protein S3 C-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) KH type 2 - Molecular Function: nucleic acid binding (GO:0003676) Eukaryotic/archaeal ribosomal protein S3 - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: small ribosomal subunit (GO:0015935)	19
2	119191	Ribosomal protein S3 C-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Eukaryotic/archaeal ribosomal protein S3 - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: small ribosomal subunit (GO:0015935) KH type 2 - Molecular Function: nucleic acid binding (GO:0003676) KH prokaryotic type	19
5	129545	Ribosomal protein S3 C-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Eukaryotic/archaeal ribosomal protein S3 - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: small ribosomal subunit (GO:0015935) KH type 2 - Molecular Function: nucleic acid binding (GO:0003676) KH prokaryotic type	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U243130	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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