Sol Genomics Network

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Unigene SGN-U268289

Unigene Basic Information

Unigene ID:	SGN-U268289
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268289
mRNA sequence:	Length: 1638 bp

>SGN-U268289 Solanum tuberosum #4 (85 members)
CGAGACTAGGCGAACTCCAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCTGAACCCTACCTCACCGCCTTGGAGGATCC
TCCGTATCGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGTTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATT
AGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGTCCTGATGACACTCCTTGGGATGGTGGTACGTTCAAG
TTGACTCTTCAATTCTCTGAGGATTACCCCAATAAGCCACCCACCGTGCGGTTTGTTTCTCGAATGTTTCATCCTAATATTTATGCGGAT
GGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCTGCTATACTTACATCCATTCAGTCATTGCTGTGT
GATCCAAACCCCAACTCACCTGCAAACTCGGAAGCAGCTCGGATGTTCAGTGAGAATAAAAGGGAGTACAATCGCAGAGTGAGAGAAATT
GTGGAGCAGAGCTGGACTGCTGACTGATTCTATGGACGAAAGATGTCCTTGCAGACCTCAGATGAAGAGCACCACGGCTCAGCTATGTTA
TATTTATGGATTGAAACCTCCTCTTTGAAATTTTATTTTAATGGAACTCATTTGTTTGATCCTAGTATTCTGGTTAGGTTCTATTGCCTA
ATTGTCATTTGCTGCATTGCATTGACAAACCTTCTGTAAAATATGGATGTGTGTTTTGGTTTAGAAATGCAAGGAACTTCCCATACGCAT
GGGAATTGGTTTTCATGTAAAAAAAAAAAAAAAAAAAAAAATTCTTTCTTCTTAATATATCTCTTTCATTTTTTTCTAATTATATTCTTT
TTAATCCACAAAGGCAAAGAAAGAAAATCAGTTTGATTCAATGGCTTCTTCAAGTGGAATTGGAAATAATGATGAATTGACTCCTTTACA
AAAGCATGTAATGTTTTTTGATATTAACAAAGATGGAATTATATATCCTTGGGAAACATATCAAGGTTTTAGAAAATTGGGACGTAATGT
TTTTCGTTCACTTTTAGCTGCTGTTCTCATCCATATTGTTACAAGTGGCAAGACTCGACCAGGAAAATGGCCATCTCCACTATTTCCAAT
TGTGATTAAAAATATAAAATTTGGCAAACATGGCAGTGATTCTGATGCCTATGATTCTGAAGGAAGGTTTGTGCCAGAGAAATTTGAGGA
GATTTTCAAGAAATATGCACATAAAAATTCAGAGTCTTTAACATCAGAAGAAGTGAATGAATTGCTCAAGAAAAATAGAGAACCTAAGGA
CTACTTTGGATGGCTTAATGCTATGACAGATTGGAGGCTCCTATTTGATGTGGGAAAAAACAAGGATGGTATATTGACTAAAGAAGCAGT
AAGAGATGTTTATGATGGAACCCTTTTTGAACAAAAGGCAAGAGAAGTTGCTGCAGAGAAGTCAAAAGTGAATTAACTATATTTATAAAA
AAAAGTTATTTTATTTATACTATAATTTATTTTTTTTTGTCTTGTTTGATAATTTTGATACTCTTTGGTTGTACAAACATCAAGGGACCT
GATACAGTTATTTCTGAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ294271	ubiquitin carrier	ubiquitin carrier

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	6
Solanum tuberosum	ACDC	Sprouting Tubers	5177	11
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	16
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	6
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	5
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TBSK	Tuber Skin	4812	4
Solanum tuberosum	TUBS	Tubers	5976	5
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	4

mRNA member sequences (85)

Alignment image suppressed for unigene with 85 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	25	UBQ_conjugat	316
2	22786	Caleosin	20
5	56455	Caleosin	40
1.1	101402	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	283
2	119107	Caleosin related	20
5	129108	Caleosin related Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	40

Preceding Unigenes (2)

Unigene	Build
SGN-U243632	Solanum tuberosum #3
SGN-U248461	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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