Sol Genomics Network

Unigene SGN-U268316

Unigene Basic Information

Unigene ID:	SGN-U268316
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268316
mRNA sequence:	Length: 1394 bp

>SGN-U268316 Solanum tuberosum #4 (282 members)
CTGTTGTTTACACTATAACCTAATTTCTCTCTTTGCATTTCTCTTGCTTTCATCCTTTTTTCTTAGCAATGGCCAATGGCAAGATCAAAA
TCGGAATCAACGGATTCGGTAGAATTGGTCGTTTGGTAGCTAGAGTTGCTCTGCAGAGGGATGATGTTGAACTAGTTGCAGTGAACGATC
CATTTATTTCCACTGATTACATGACATATATGTTTAAGTATGATTCAGTACATGGACAATGGAAGCACCATGAGCTTAAGGTTAAGGATG
AGAAGACCCTTCTCTTCGGTGAGAAGGCTGTTACAGTTTTTGGAATCAGGAACCCTGAAGATATCCCATGGGGGGAAGCTGGTGCTGACT
TCGTTGTTGAATCAACCGGTGTCTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTTGTGATCTCCGCTC
CTAGCAAAGATGCCCCCATGTTTGTTGTGGGTGTCAACGAGAATGAATACAAGCCAGAGTTGGACATTGTCTCCAACGCTAGTTGCACTA
CTAACTGCCTTGCACCTTTGGCTAAGGTCATCAATGATAGGTTTGGCATTGTGGAGGGTCTCATGACCACTGTCCACGCCATGACTGCCA
CCCAGAAAACTGTTGATGGTCCATCCATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATCCCTAGCAGCACTGGAGCAG
CCAAGGCTGTTGGAAAAGTGCTCCCATCACTTAACGGCAAATTGACTGGAATGGCCTTCAGAGTACCAACTGCTGATGTTTCCGTTGTCG
ACCTTACTGTAAGACTTGAGAAAGAAGCCTCATATGAAGACATCAAGGCTGCAATCAAGGAGGAATCAGAGGGTAAATTGAAGGGTATCT
TGGGATACACTGAAGATGATGTGGTTTCCACAGACTTTGTTGGTGACAGCAGGTCAAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGA
GCAAGAACTTTGTGAAACTTGTGTCATGGTATGACAACGAATGGGGTTACAGTTCCCGTGTGATTGATTTGATCTGCCATATGGCTAAGG
CTTGATTGATGCTGCTGGGGAGCAAAAGACGAAATCTGTTTTAGTTTTTGCTTGAAGTATTAGTTTTCTGGGCCGGGAGTGGTCTTTCTT
GTTTATGTGTAATGGAATAACCAGAGAGGAACGGAACCTTGTTGTTATCTTTGAGGATATCTTTTACTGTTTGACTTGTCATGAATGAAT
CAAACTTTACTTTTTCCAGTAAAAAAAAAAAAAAAAAAAAATTTTGTTATCCTTGTGTAAGTCTTGGTTTGGCTAATTATATCTTTTTAG
TGTCCCATATATATATCCCTAACTACTATTTTCGTGAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
gapdh	glyceraldehyde 3-phosphate dehydrogenase	glyceraldehyde 3-phosphate dehydrogenase

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	4
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	9
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	3
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	5
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	11
Solanum tuberosum	STOL	Stolon	6462	19
Solanum tuberosum	SWST	Stolon	5942	18
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	32
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	69
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	16
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	18
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	17
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	41
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (282)

Alignment image suppressed for unigene with 282 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	193	GAP_dhdrogenase GAPDH-I E4PD_g-proteo	76
2	22084	GAP_dhdrogenase GAPDH-I E4PD_g-proteo	74
5	56472	GAP_dhdrogenase GAPDH-II_archae GAPDH-I E4PD_g-proteo Asp_ADH_USG1	39
1.1	101545	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	78
2	118512	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	71
5	129136	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	37

Preceding Unigenes (1)

Unigene	Build
SGN-U243223	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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