Sol Genomics Network

Unigene SGN-U268627

Unigene Basic Information

Unigene ID:	SGN-U268627
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268627
mRNA sequence:	Length: 1619 bp

>SGN-U268627 Solanum tuberosum #4 (85 members)
CTTTCGCCAACCAAAAACCTTACAGCCTCAAATCTCAAATCTCCTCTTTTAGTTCTTCAACAATGGCTGTAACTTTCTCAAATCTTCACA
CTGAAGCTGGTCTTAAGTCTGTTAATGACCATCTTTCTGGAAAAACTTATATTTCTGGAGATCAGCTGACTAAGGATGATATTAAGGTAT
ATGGGGCAATTTCTGAACAACCCAGTTCAGATCTTTACCCCAATGCTAGTAAATGGTACCAAGCTGTTTCTGCAAAACTTGCCTCAAGTT
TTCCTGGGAAAGCTGTTGGTGTGAGATTCGGAAGCCAAGCTGCTCCTGCTGAAGCTGCACCCGCTAAGGAAGCTGCCAAGCCTGCCGCTG
ATGACGATGACGATGATGATATTGATCTCTTTGGAGAAGAGACAGAGGAGGAGAAGGCAGCAGCAGAATCAAGGGAGGCTGCTAAGGCAT
CTACCAAGAAGAAAGAGAGTGGAAAGTCATCCGTTCTTATGGACGTTAAGCCTTGGGATGATGAAACCGATATGAAGAAACTGGAGGAGG
CTGTTCGTGGTGTTCAGATGGAAGGGCTTCTCTGGGGAGCATCCAAATTGGTCCCTGTTGGATACGGGATTAAGAAATTGCAGATCATGC
TTACCATCGTCGATGACCTTGTCTCTGTGGATACCCTCATTGAGGAACGCCTAACAGAAGAGCCCATCAACGAATACGTCCAGAGCTGTG
ATATTGTTGCCTTCAACAAAATTTAAGGTCAACACGAGATGGAACTCTCTATCCGGATTGAGCCTTGTCAGGCTGTATTTTTGCTAGTTT
TTGAGTTGTTCTGAAACTTTATTTCTAGTATTTATCGTCGCTCTTTTTGTTCAAGTGCGTTTACTCATGAAATGGAAATGTTACTCTGAA
AGCATATGAAGCTGAGAATTATGATCATCTCGGCACGAGGAAAGAATGAGCCTTATCTAGTAACCTGAGGTTACATGTTATTGTTAAAAC
CAACACAATTTTGGCAAACTCTCTGATTAAATTCAAAAAAAAGAAGTGAAATTCAACTGTCTTAATGGCTAATTCTCTGTGTTTCACCCC
TTTAGCTTCATTGAACACTTTCAATAAACCAGGTTTAATTAATGGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGT
TACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAGGAGCATAGTCTGTCA
AAAGTGTGAGGGAAATGGTGCAGTGGCGTGCTCACAATGTAAAGGCGTTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGC
AGGTGGACTATGTTGGCTGTGCAGAGGTAAAAAAGATATATTATGTGGTGACTGCAATGGAGCTGGATTTCTTGGTGGATTTATGAGTAC
GTTCGATGAGTAGACTTCAGATGCACTAGTCTCGAGTAGACTCGGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCAGAATTTAAACT
TGATGAGTTCAGTTTCTAAAATTCTCAGTATTGAACTCATTGTACTTTTGATATTATGATTTCATAATTTGATATTTGTTNAAACTTTA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ207867	elongation factor 1B alpha-subunit

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	4
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	6
Solanum tuberosum	SWST	Stolon	5942	6
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	9
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	7
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	8
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	17

mRNA member sequences (85)

Alignment image suppressed for unigene with 85 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	440	EF1_BD	39
2	22355	EF1_BD	33
5	56534	EF1_BD	33
1.1	101929	Glutathione S-transferase C-terminal-like Elongation factor 1 beta/beta&apos /delta chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414)	28
2	118830	Elongation factor 1 beta/beta&apos /delta chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Glutathione S-transferase C-terminal-like	28
5	129259	Elongation factor 1 beta/beta&apos /delta chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Glutathione S-transferase C-terminal-like	28

Preceding Unigenes (2)

Unigene	Build
SGN-U243556	Solanum tuberosum #3
SGN-U247602	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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