Sol Genomics Network

Unigene SGN-U268991

Unigene Basic Information

Unigene ID:	SGN-U268991
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268991
mRNA sequence:	Length: 1920 bp

>SGN-U268991 Solanum tuberosum #4 (54 members)
GTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAGATC
TTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTGGCCCTTACATCAACTGCAGTAAAGA
AGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAACATTT
CAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAGCTAGAAG
TTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTC
CCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAG
ATTCTTGTGCTGCTATAATACTGGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAG
CCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGA
AGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTG
ACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATT
TTTTGGGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGTGTTTTTTTTCCACAATTTAGATGGTTTCTGAAT
GAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACCAAAGTGATTG
ATGTGTTCCCTCTGGAAGAGCATTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAATTTCATTTTAATTGTTTCTA
AACCCTCCTCCTCTAGTCGCCATTACTGCTAACACCTGTTGTTCAAAATGGTTGAAACTCTGTTTGAAGATATATTTACAGTCACTCAGA
AAGATCCTGATGGAAAAAAATTTGATCGAGTTAATCGCATTGAAGCACGGAGTGAGCAGTTTGATATGTTCATGCTACTGGATATAAACA
CTGAAATATATCCTATGCGCGTGAAGGATAAATTTATGATGGTTTTAGCTTCTACTTTGAACTTGGATGGGACTCCAGATACTGGTTATT
TCATTCAGGGTAACAAGAAATCACTTGCTGACAAGTTCGAATATGTCATGCATGGGAAGCTATATAGGATCTCAGAGGAAGGTTCTGGGA
AGCACGTTAAAGCGGACATTTTTGTTTCATTTGGAGGACTTCTGATGCAGCTGAGAGGAGATCCATCCATTGCAGCTAAGTTTGAGCTTG
ATCAGAAGATTTTCCTTCTCATAAGGAAGGTTTGATGTAAACAAATTTGGTAACAACTCAATTTGAACTTAAAAGGCGACGGACTATTTG
TGAGCGCCTAAGCTATTGGCACGTGATATATCGCGTGGTGGTCTCAGTTTCTCAAGGATACAAAAGAATGTAATTGAGATATATAATAAC
GTAGACCATGGAACAAGAGCTCTATATATGTTTTGCAAGGTCTTAAAAGTTTAGCCGTCTTAGAATCAACTTCAGATATGCGGGTCATTG
CAGAGTGTGAAAGTTCGAATTTAGTGGACT

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
DQ228321	POM30
pom30	X94305 POM30

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	CSWB	Tubers	6124	7
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	5
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (54)

Alignment image suppressed for unigene with 54 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	308	Porin_Euk	51
2	22197	Porin_Euk	46
5	57003	Porin_Euk RNA_pol_Rpb8	18
1.1	101673	Porin eukaryotic type - Cellular Component: mitochondrial outer membrane (GO:0005741) - Biological Process: anion transport (GO:0006820) - Molecular Function: voltage-gated ion-selective channel activity (GO:0008308)	48
2	118656	Porin eukaryotic type - Cellular Component: mitochondrial outer membrane (GO:0005741) - Biological Process: anion transport (GO:0006820) - Molecular Function: voltage-gated ion-selective channel activity (GO:0008308)	39
5	129813	RNA polymerase Rpb8 - Biological Process: transcription (GO:0006350) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	15

Preceding Unigenes (2)

Unigene	Build
SGN-U244010	Solanum tuberosum #3
SGN-U249343	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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