Sol Genomics Network

Unigene SGN-U268114

Unigene Basic Information

Unigene ID:	SGN-U268114
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268114
mRNA sequence:	Length: 2304 bp

>SGN-U268114 Solanum tuberosum #4 (205 members)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCGTTTTAAGCAGTTCTCAATATAATTATACAGGGTTTCTAAACAACCGAGCAGTTTC
TGGGATTGTGTTTCGACGAATCACCCCTTGTAGTAGCGAGATGTGAAACCAGCAAACCATTTTGCAGAATGTATTATTTACAGATTATGT
TGAAGAACTTGCATAGATAAAGGATAATGCAAGTGTTGTTTGTAATTTGTGTACCATTGATTAATCAGTCTTACAAGAGAGATAATAAAT
GAGACACAAAAGTATCAGTATTATTTTAATCGAGTCGATTCCATGATTAAAAAAAAAAAAAAAAAAAAAAAACTCAGACTAGTTCTCTCG
AATTCTGTGTTAAACAATTTTTTAGCTTATTGTTTACTCTTTTCTCCTCCAAATTTCTAGGGTTTCTCTCGAAGAATTTTCTGTAAGAAT
TTTTTTCGGATTTGGAAAGTTTGTGATTCTTTTGGGAAAAGTTGGATTTGGAACAAACATCAAAATTTTGTATTGTGAATGATCTAATGG
AGTCAAAAGGTGGTAAAAAGAAGTCTAGTAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCGGCTACAGCATTGAAGACGTTCGACCAA
ACGGTGGAGTGAAGAAGTTCAGATCAGCTGCTTACTCCAACTGCGCGCGCAAACCATCCTGATATTTCCTAAACTTCCTTCCTTAAAGCG
TCAATAGACGCAACCAAAAAAAAAAAAAAAAAAAAAAATTTCTTCTTTCAGTTTCTTCTTTTGTCAAGCCCTCACTCCTTTTCTTCCTTC
TTTTACTACTTCCTGCTTTTGCACTCATTGCTTTGAACATTTTCCGCTTTAACTTCCTTTGCTGCTGTGAACTTTTTCATAATGGAAATG
GACTTGCCAGTTTCTGCCATTGGTTTTGAAGGTTTTGAAAAGAGGCTCGAAATTTCTTTCGTCGAGCCTGGTCTGTTTGCTGATCCTAAT
GGAAAAGGACTTCGATCTCTCTCAAAGGCACAGTTGGATGAAATTCTCGGACCTGCTGAGTGCACCATTGTTGATAACCTATCAAATGAC
TATGTTGATTCCTATGTGCTGTCTGAGTCGAGCCTCTTCGTTTATTCTTACAAGATAATCATCAAAACATGTGGCACCACAAAGTTGCTT
CTTGCAATTCCGCCCATTCTAAGGTTGGCTGAGACCTTGTCTCTCAAAGTACAAGACGTGAGGTATACCCGTGGGAGCTTCATTTTCCCT
GGTGCTCAATCGTTTCCTCACCGCCACTTTTCTGAAGAAGTTGCTGTCCTCGATGGATATTTTGGAAAGCTTGCTGCCGGTAGCAAGGCT
GTGATTATGGGCAGTCCCGACAAAACACAGAAATGGCATGTTTACTCTGCCTCAGCTGGGCCTGTTCAGTCTAATGACCCTGTTTACACT
CTTGAGATGTGTATGACTGGTTTGGACAGGGAGAAGGCATCTGTCTTCTACAAAACTGAAGAAAGCTCGGCTGCTCACATGACTGTTAGA
TCTGGCATAAGGAAGATCCTCCCCAAGTCTGAGATATGCGATTTTGAGTTTGAACCCTGTGGTTATTCTATGAATTCTATTGAAGGAGCT
GCTGTTTCAACCATTCACATTACCCCTGAGGACGGCTTTAGCTATGCCAGCTTTGAATCTGTTGGATATAATCCTAAAACCATGGAGTTG
GGTCCCCTGGTTGAGAGAGTGCTTGCATGTTTTGAGCCAGCTGAGTTCTCTATTGCTCTGCATGCTGATGTTGCTACCAAGTTACTGGAG
CGTATTTGCTCTGTTGATGTTAAGGGCTACTCTCTTGCTGAGTGGAGTCCAGAAGAGTTTGGCGAAGGCGGTTCCATTGTCTACCAGAAG
TTCACTAGAACTCCTTACTGTGAATCTCCCAAGTCCGTTCTGAAGGGCTGCTGGAAGGAGGAAGAGAAAGAAGGAAAGGAGTAGTGTTGT
CTTGAGGGTCGTTTTGTTGTTTTTGTTTCTGTTTCAGTGTCTGTCGTTTGCTCATGTTTTCCCTGTTTCTCAGAATAATGGACTTATACG
TCCAAACTTGTGTCTGTCGAATTTGCAACGTCTGTGTGCAAATTCTGAACTAGTCTTGCCTTTTGGTGTTCTACCAGAAGCCTTTATGTG
TCTGCATTTTGAATTGTGTCATGTTGTTGGTCTCTGTTCCGTTGCGTCTAATAAAATTGTGTTTGTTATGTAAAAAAAAAAAAAAACTTT
ATTCAAGATTGCAACTGCTTGTTCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
samdc	S-adenosylmethionine decarboxylase	S-adenosylmethionine decarboxylase

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	4
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	6
Solanum tuberosum	IVROOT	Root	5850	5
Solanum tuberosum	MXFL	Floral buds	6603	14
Solanum tuberosum	MXLF	Leaves	6585	5
Solanum tuberosum	PPC	leaf 6 week old	5062	10
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	7
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	9
Solanum tuberosum	STM	mixed tissues	14805	13
Solanum tuberosum	STOL	Stolon	6462	14
Solanum tuberosum	SWST	Stolon	5942	5
Solanum tuberosum	TUBS	Tubers	5976	5
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	26
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	16
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	6
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	7
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	20
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	25
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (205)

Alignment image suppressed for unigene with 205 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	493	SAM_decarbox	36
2	22338	SAM_decarbox	34
5	56524	SAM_decarbox	34
1.1	101790	S-adenosylmethionine decarboxylase - Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014) - Biological Process: spermine biosynthesis (GO:0006597) - Biological Process: spermidine biosynthesis (GO:0008295)	37
2	118684	S-adenosylmethionine decarboxylase - Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014) - Biological Process: spermine biosynthesis (GO:0006597) - Biological Process: spermidine biosynthesis (GO:0008295)	36
5	129148	S-adenosylmethionine decarboxylase - Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014) - Biological Process: spermine biosynthesis (GO:0006597) - Biological Process: spermidine biosynthesis (GO:0008295)	36

Preceding Unigenes (2)

Unigene	Build
SGN-U243201	Solanum tuberosum #3
SGN-U243205	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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